Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0119.Seq
         (648 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC016987-1|AAH16987.1|  284|Homo sapiens FAM44A protein protein.       30   6.2  
AB037748-1|BAA92565.2| 1804|Homo sapiens KIAA1327 protein protein.     30   6.2  

>BC016987-1|AAH16987.1|  284|Homo sapiens FAM44A protein protein.
          Length = 284

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = -1

Query: 630 STKAEEGTCQKSQEETHS---EQRGRTRSDGATTSNDNDKQYDSTTRTTVAPNIRKRS*D 460
           S  AE    ++ ++++ S   E +    SD      + D+   +TTR+T     ++    
Sbjct: 191 SDDAESSEPERKRQKSVSDPVEDKKEQESDEEEEEEEEDEPSGATTRSTTRSEAQRSKTQ 250

Query: 459 LSNQIRLKMKILPPNPKS 406
           LS  I+ K ++ PP  ++
Sbjct: 251 LSPSIKRKREVSPPGART 268


>AB037748-1|BAA92565.2| 1804|Homo sapiens KIAA1327 protein protein.
          Length = 1804

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = -1

Query: 630  STKAEEGTCQKSQEETHS---EQRGRTRSDGATTSNDNDKQYDSTTRTTVAPNIRKRS*D 460
            S  AE    ++ ++++ S   E +    SD      + D+   +TTR+T     ++    
Sbjct: 1711 SDDAESSEPERKRQKSVSDPVEDKKEQESDEEEEEEEEDEPSGATTRSTTRSEAQRSKTQ 1770

Query: 459  LSNQIRLKMKILPPNPKS 406
            LS  I+ K ++ PP  ++
Sbjct: 1771 LSPSIKRKREVSPPGART 1788


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,857,568
Number of Sequences: 237096
Number of extensions: 1260802
Number of successful extensions: 12681
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12676
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)