Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0119.Seq
(648 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68118-2|CAA92188.2| 165|Caenorhabditis elegans Hypothetical pr... 30 1.6
U78081-1|AAB84362.1| 246|Caenorhabditis elegans RNA polymerase ... 30 1.6
AC024832-4|AAF59612.1| 250|Caenorhabditis elegans Mediator prot... 30 1.6
U41274-6|AAA82462.1| 601|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z81481-2|CAB03948.1| 593|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z70212-2|CAA94163.1| 430|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z70683-1|CAA94590.1| 511|Caenorhabditis elegans Hypothetical pr... 29 3.8
U50071-8|AAV34806.1| 795|Caenorhabditis elegans Uncoordinated p... 29 3.8
U50071-7|AAV34805.1| 905|Caenorhabditis elegans Uncoordinated p... 29 3.8
U50071-3|AAA93444.1| 1867|Caenorhabditis elegans Uncoordinated p... 29 3.8
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 29 3.8
U39847-3|AAB41826.1| 1815|Caenorhabditis elegans AO49 ankyrin pr... 29 3.8
U39847-2|AAB41828.1| 1867|Caenorhabditis elegans AO66 ankyrin pr... 29 3.8
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 29 3.8
U21732-1|AAA85853.1| 970|Caenorhabditis elegans UNC-44 protein. 29 3.8
U21731-1|AAA85852.1| 985|Caenorhabditis elegans UNC-44 protein. 29 3.8
Z78420-2|CAB01710.3| 738|Caenorhabditis elegans Hypothetical pr... 28 5.0
AC006810-1|AAF59633.1| 182|Caenorhabditis elegans Hypothetical ... 28 5.0
Z92777-5|CAB07171.1| 409|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z79601-6|CAB01887.1| 872|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z79596-9|CAB01859.1| 872|Caenorhabditis elegans Hypothetical pr... 28 6.6
AC006835-2|AAF40014.1| 229|Caenorhabditis elegans Hypothetical ... 28 6.6
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 27 8.7
>Z68118-2|CAA92188.2| 165|Caenorhabditis elegans Hypothetical
protein R01E6.2 protein.
Length = 165
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 158 LKLMFPFVIPRSYHHGSRCRCL 223
L L+FPFV+P +Y++G+ C+
Sbjct: 8 LALLFPFVLPFNYNNGASAACI 29
>U78081-1|AAB84362.1| 246|Caenorhabditis elegans RNA polymerase
transcriptionalregulation mediator protein.
Length = 246
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 621 AEEGTCQKSQEETHSEQRGRTRSDGATTSNDNDKQYDSTTRTT 493
AE+ ++ +EE E+ +++ TTS D K + T RTT
Sbjct: 201 AEDALEREEKEEVEEEEEETLKTEEPTTSTDEPKFAEPTARTT 243
>AC024832-4|AAF59612.1| 250|Caenorhabditis elegans Mediator protein
6 protein.
Length = 250
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 621 AEEGTCQKSQEETHSEQRGRTRSDGATTSNDNDKQYDSTTRTT 493
AE+ ++ +EE E+ +++ TTS D K + T RTT
Sbjct: 205 AEDALEREEKEEVEEEEEETLKTEEPTTSTDEPKFAEPTARTT 247
>U41274-6|AAA82462.1| 601|Caenorhabditis elegans Hypothetical
protein T04G9.6 protein.
Length = 601
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 128 TQSHKVMQGLLKLMFPFVIPRSY 196
++ HK+ + L +FPF IPRSY
Sbjct: 514 SRCHKITKDLSNSLFPFCIPRSY 536
>Z81481-2|CAB03948.1| 593|Caenorhabditis elegans Hypothetical
protein C38D9.2 protein.
Length = 593
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = -1
Query: 582 HSEQRGRTRSDGATT--SNDNDKQYDSTTRTTVAPNIRKRS*DLSNQIRLKMKILPPNPK 409
HS Q +SDG ++ SN+ D +++TT T P ++S + + +K P
Sbjct: 237 HSNQSSPIKSDGYSSENSNEQDSSFETTTEETPLP---EKSPPKAVETPMKTIGKEKAPP 293
Query: 408 SSQKLMAPTNMKRNQVRINNKK 343
S KL+ T + + + K
Sbjct: 294 SEDKLLTHTTNMEERDHVTDTK 315
>Z70212-2|CAA94163.1| 430|Caenorhabditis elegans Hypothetical
protein R04D3.3 protein.
Length = 430
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -1
Query: 648 NDSRARSTKA--EEGTCQKSQEETHSEQRGRTRSDGATTSNDNDKQYD 511
N++R RST+ EEG E+ + E+ +TR + ND+D D
Sbjct: 268 NNARGRSTRKHREEGESDDENED-YEEEESKTRKTNRRSRNDDDDILD 314
>Z70683-1|CAA94590.1| 511|Caenorhabditis elegans Hypothetical
protein F13B12.1 protein.
Length = 511
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = -3
Query: 400 KTDGSNKYEAESSSHKQQEARKQSNRVVEKSTDGDN 293
K+ G+N+Y+ +++ + ++NR+V+ S +G N
Sbjct: 473 KSTGNNRYDQTFRDFQERTKKSKANRIVKVSLEGRN 508
>U50071-8|AAV34806.1| 795|Caenorhabditis elegans Uncoordinated
protein 44, isoform d protein.
Length = 795
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -1
Query: 642 SRARSTKAEEGTCQKSQEETHSEQRGRTRSDGATTSNDNDKQYDSTTRTTVAPNIRKRS 466
+ + S + E Q + E+H E G + TTS+ ++ S TR +V P + S
Sbjct: 728 AESTSEQVPEDVEQSVESESHREDDGTIVTTTVTTSHISESPSGSPTRRSVEPEEHRHS 786
>U50071-7|AAV34805.1| 905|Caenorhabditis elegans Uncoordinated
protein 44, isoform b protein.
Length = 905
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -1
Query: 642 SRARSTKAEEGTCQKSQEETHSEQRGRTRSDGATTSNDNDKQYDSTTRTTVAPNIRKRS 466
+ + S + E Q + E+H E G + TTS+ ++ S TR +V P + S
Sbjct: 838 AESTSEQVPEDVEQSVESESHREDDGTIVTTTVTTSHISESPSGSPTRRSVEPEEHRHS 896
>U50071-3|AAA93444.1| 1867|Caenorhabditis elegans Uncoordinated
protein 44, isoform c protein.
Length = 1867
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -1
Query: 642 SRARSTKAEEGTCQKSQEETHSEQRGRTRSDGATTSNDNDKQYDSTTRTTVAPNIRKRS 466
+ + S + E Q + E+H E G + TTS+ ++ S TR +V P + S
Sbjct: 1742 AESTSEQVPEDVEQSVESESHREDDGTIVTTTVTTSHISESPSGSPTRRSVEPEEHRHS 1800
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -1
Query: 642 SRARSTKAEEGTCQKSQEETHSEQRGRTRSDGATTSNDNDKQYDSTTRTTVAPNIRKRS 466
+ + S + E Q + E+H E G + TTS+ ++ S TR +V P + S
Sbjct: 1748 AESTSEQVPEDVEQSVESESHREDDGTIVTTTVTTSHISESPSGSPTRRSVEPEEHRHS 1806
>U39847-3|AAB41826.1| 1815|Caenorhabditis elegans AO49 ankyrin
protein.
Length = 1815
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -1
Query: 642 SRARSTKAEEGTCQKSQEETHSEQRGRTRSDGATTSNDNDKQYDSTTRTTVAPNIRKRS 466
+ + S + E Q + E+H E G + TTS+ ++ S TR +V P + S
Sbjct: 1748 AESTSEQVPEDVEQSVESESHREDDGTIVTTTVTTSHISESPSGSPTRRSVEPEEHRHS 1806
>U39847-2|AAB41828.1| 1867|Caenorhabditis elegans AO66 ankyrin
protein.
Length = 1867
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -1
Query: 642 SRARSTKAEEGTCQKSQEETHSEQRGRTRSDGATTSNDNDKQYDSTTRTTVAPNIRKRS 466
+ + S + E Q + E+H E G + TTS+ ++ S TR +V P + S
Sbjct: 1742 AESTSEQVPEDVEQSVESESHREDDGTIVTTTVTTSHISESPSGSPTRRSVEPEEHRHS 1800
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -1
Query: 642 SRARSTKAEEGTCQKSQEETHSEQRGRTRSDGATTSNDNDKQYDSTTRTTVAPNIRKRS 466
+ + S + E Q + E+H E G + TTS+ ++ S TR +V P + S
Sbjct: 1748 AESTSEQVPEDVEQSVESESHREDDGTIVTTTVTTSHISESPSGSPTRRSVEPEEHRHS 1806
>U21732-1|AAA85853.1| 970|Caenorhabditis elegans UNC-44 protein.
Length = 970
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -1
Query: 642 SRARSTKAEEGTCQKSQEETHSEQRGRTRSDGATTSNDNDKQYDSTTRTTVAPNIRKRS 466
+ + S + E Q + E+H E G + TTS+ ++ S TR +V P + S
Sbjct: 845 AESTSEQVPEDVEQSVESESHREDDGTIVTTTVTTSHISESPSGSPTRRSVEPEEHRHS 903
>U21731-1|AAA85852.1| 985|Caenorhabditis elegans UNC-44 protein.
Length = 985
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -1
Query: 642 SRARSTKAEEGTCQKSQEETHSEQRGRTRSDGATTSNDNDKQYDSTTRTTVAPNIRKRS 466
+ + S + E Q + E+H E G + TTS+ ++ S TR +V P + S
Sbjct: 918 AESTSEQVPEDVEQSVESESHREDDGTIVTTTVTTSHISESPSGSPTRRSVEPEEHRHS 976
>Z78420-2|CAB01710.3| 738|Caenorhabditis elegans Hypothetical
protein F45H11.3 protein.
Length = 738
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Frame = -1
Query: 645 DSRARSTKAEEGTCQKSQEETHSEQRGRTRSDGATTSNDNDKQYDSTTRTTVAPNIRKRS 466
DS + +E E SE+ + D ++ ++YD + +AP + +
Sbjct: 145 DSEQYDSTEDEEVSHVEDENCDSEEISQ---DEEEYEDEEGEEYDDDDESRIAPILTDYT 201
Query: 465 *DL--SNQIRLKMKILPPNPKSSQKLMAPTNMKRNQVRINN 349
+ S++I LK + P P+ T +K +RI +
Sbjct: 202 APMIVSDKIPLKEAFVEPKPRGQTGQQQDTEVKHRLIRIGD 242
>AC006810-1|AAF59633.1| 182|Caenorhabditis elegans Hypothetical
protein Y5H2B.3 protein.
Length = 182
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/65 (21%), Positives = 26/65 (40%)
Frame = -1
Query: 603 QKSQEETHSEQRGRTRSDGATTSNDNDKQYDSTTRTTVAPNIRKRS*DLSNQIRLKMKIL 424
+K + E E + + + + + S+ + K S D NQ+ +K K+
Sbjct: 100 KKEKSEQKKEAKEQVNKEKSEEKKKESVKRKSSEKLEAPSKKAKNSEDQENQVAIKKKVT 159
Query: 423 PPNPK 409
PP K
Sbjct: 160 PPKTK 164
>Z92777-5|CAB07171.1| 409|Caenorhabditis elegans Hypothetical
protein C17H1.7 protein.
Length = 409
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = -1
Query: 648 NDSRARSTKAEEGTCQKSQEETHSEQRGRTRSDGATTSNDNDKQYDSTTRTTVAPNIR 475
N R R ++ E + +K++EE QR T +N+K+ D ++ N++
Sbjct: 43 NRQRMRDLRSSELSQRKTEEERADIQRQAALEQLQATKTENNKREDELRKSQFEANVK 100
>Z79601-6|CAB01887.1| 872|Caenorhabditis elegans Hypothetical
protein K09A9.6 protein.
Length = 872
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 394 DGSNKYEAESSSHKQQEARKQSNRVVEKSTDGDN 293
D N + E +K+ +S++VVE+ DGD+
Sbjct: 295 DDGNDDDEEDGKNKKTSVEAKSDKVVEEKNDGDD 328
>Z79596-9|CAB01859.1| 872|Caenorhabditis elegans Hypothetical
protein K09A9.6 protein.
Length = 872
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 394 DGSNKYEAESSSHKQQEARKQSNRVVEKSTDGDN 293
D N + E +K+ +S++VVE+ DGD+
Sbjct: 295 DDGNDDDEEDGKNKKTSVEAKSDKVVEEKNDGDD 328
>AC006835-2|AAF40014.1| 229|Caenorhabditis elegans Hypothetical
protein ZK993.1 protein.
Length = 229
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 648 NDSRARSTKAEEGTCQKSQEETHSEQR-GRTRSDGATTSNDNDK 520
+DSR ++ C +S E+T +R R S G TS+ K
Sbjct: 170 DDSRTSKHSGDDSECDESDEDTRKVKRIKRENSSGKETSSPESK 213
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 633 RSTKAEEGTCQKSQEETHSE-QRGRTRSDGATTSNDNDK 520
R+ KAEE ++ + E E +R R R + + S+D+DK
Sbjct: 156 RNRKAEEAASKRRKREAEVEAERKRKRKEISVDSDDDDK 194
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,174,468
Number of Sequences: 27780
Number of extensions: 218785
Number of successful extensions: 897
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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