Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0119.Seq
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    35   8e-04
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    35   8e-04
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    35   8e-04
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.8  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 34.7 bits (76), Expect = 8e-04
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 301 HQCSSLLLYCSVCALLVVYANLI--PLHICWSHQFLRTFWI 417
           H CSS   Y  +C LL++ ANLI  P+ I + +  L T WI
Sbjct: 82  HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 122


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 34.7 bits (76), Expect = 8e-04
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 301 HQCSSLLLYCSVCALLVVYANLI--PLHICWSHQFLRTFWI 417
           H CSS   Y  +C LL++ ANLI  P+ I + +  L T WI
Sbjct: 82  HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 122


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 34.7 bits (76), Expect = 8e-04
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 301 HQCSSLLLYCSVCALLVVYANLI--PLHICWSHQFLRTFWI 417
           H CSS   Y  +C LL++ ANLI  P+ I + +  L T WI
Sbjct: 82  HPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 122


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -2

Query: 596 HKKKHIQSNEEEQDLTEQLRPTIMISNTIR 507
           HK+ HI    E+++ TE     +++    R
Sbjct: 192 HKETHIDWQPEDEECTEATAGAVVLETCQR 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,614
Number of Sequences: 438
Number of extensions: 2734
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)