Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0118.Seq
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.0  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   8.7  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    21   8.7  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +1

Query: 397 SNGLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHRILNTT 525
           +NG+ + R  + V T+++    S  + N+T  A+ S  +   T
Sbjct: 648 TNGIVINRASKRVSTLSIDNVQSTHVGNYTCLASNSASVTTYT 690



 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 132 LGSDATLFNYVAN 94
           +GSD +L+N+ AN
Sbjct: 160 VGSDGSLYNHTAN 172


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 224 DAWSDFGWSQLP 189
           D WS F W+ LP
Sbjct: 915 DQWSSFYWNLLP 926


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 224 DAWSDFGWSQLP 189
           D WS F W+ LP
Sbjct: 915 DQWSSFYWNLLP 926


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 139 GVSLPLFESIYVPCRD 186
           G++ P+F  +YV C D
Sbjct: 149 GLTSPIFNLVYVYCCD 164


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = -1

Query: 348 YWVAQDSSYKYFEVI 304
           Y+V ++  YKY++++
Sbjct: 151 YFVQRNQEYKYYQIL 165


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,330
Number of Sequences: 336
Number of extensions: 3277
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)