Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0118.Seq
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces... 129 4e-31
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos... 129 4e-31
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 27 3.1
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 25 7.1
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 25 9.4
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 9.4
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 25 9.4
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ... 25 9.4
>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 129 bits (311), Expect = 4e-31
Identities = 65/109 (59%), Positives = 74/109 (67%)
Frame = -1
Query: 582 RPTRPDKARRLGLPC*TRLCCIQNPVRRGGRKRPVAKGATYGKPKSHGVNQLKPTRNLQS 403
RP+RPDKARRLG + VRRGGRKRPV KG TYGKP GVN LK R+ +
Sbjct: 41 RPSRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARC 100
Query: 402 IAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDPSHKAIRRDPKIN 256
AEE L+SYWV QD++YK+FEVILVDPSHKAIRRDP+IN
Sbjct: 101 TAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILVDPSHKAIRRDPRIN 149
Score = 72.9 bits (171), Expect = 4e-14
Identities = 34/54 (62%), Positives = 40/54 (74%)
Frame = -3
Query: 253 IVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 92
IVN VHKHRE RGLTS G+ SRG+GKGHR++ + + A WLR NTL LRR R
Sbjct: 151 IVNPVHKHRESRGLTSIGKKSRGIGKGHRFNNS---PQHATWLRHNTLSLRRYR 201
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 643 FLMRVRVWQNRQXTRMHRRSQ 581
FL RVR W+ RQ +HR S+
Sbjct: 21 FLSRVRAWEYRQMNVIHRASR 41
>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
L15b|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 129 bits (311), Expect = 4e-31
Identities = 65/109 (59%), Positives = 74/109 (67%)
Frame = -1
Query: 582 RPTRPDKARRLGLPC*TRLCCIQNPVRRGGRKRPVAKGATYGKPKSHGVNQLKPTRNLQS 403
RP+RPDKARRLG + VRRGGRKRPV KG TYGKP GVN LK R+ +
Sbjct: 41 RPSRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARC 100
Query: 402 IAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDPSHKAIRRDPKIN 256
AEE L+SYWV QD++YK+FEVILVDPSHKAIRRDP+IN
Sbjct: 101 TAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILVDPSHKAIRRDPRIN 149
Score = 74.5 bits (175), Expect = 1e-14
Identities = 35/54 (64%), Positives = 40/54 (74%)
Frame = -3
Query: 253 IVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 92
IVN VHKHRE RGLTS G+ SRG+GKGHRY+ + + A WLR NTL LRR R
Sbjct: 151 IVNPVHKHRESRGLTSIGKKSRGIGKGHRYNNS---PQHATWLRHNTLSLRRYR 201
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 643 FLMRVRVWQNRQXTRMHRRSQ 581
FL RVR W+ RQ +HR S+
Sbjct: 21 FLSRVRAWEYRQMNVIHRASR 41
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 525 ITLFSTVSLVFGLCPALWAWXRR 593
+ + S +S+VF L W W RR
Sbjct: 34 VIIASAISIVFSLIAIFWRWSRR 56
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = -1
Query: 87 HLSKTVSDFPFAYFCMQMESQWVNKILLL 1
HL FP+ YFC+ + ++++ +L
Sbjct: 178 HLFYVFQSFPWTYFCLAVSGTCISELYVL 206
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 25.0 bits (52), Expect = 9.4
Identities = 6/19 (31%), Positives = 13/19 (68%)
Frame = -2
Query: 59 HLLIFVCRWKASGLIKYYC 3
++++F+C W G ++ YC
Sbjct: 649 NIILFLCLWVQGGRVRAYC 667
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 379 SLRWSPCVELLLGCTRFF 326
SL+ P V LL+G TRFF
Sbjct: 568 SLKVPPLVPLLIGTTRFF 585
>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 273
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 403 GLKVARGLQLVDTMALGLAISGTLSNW 483
GL VA G Q DT+ LG+ I +S++
Sbjct: 93 GLTVALGPQFPDTLVLGMEIRMQVSDY 119
>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 214 LTSAGRSSRGLGKG-HRYSQTKGGSRRAAWLRRN 116
++SAG S G GKG + T +RRAA RN
Sbjct: 236 VSSAGYSGEGYGKGTYATDTTAEANRRAATGTRN 269
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,197
Number of Sequences: 5004
Number of extensions: 50743
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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