Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0118.Seq
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 128 5e-30
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 128 5e-30
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 50 7e-10
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 31 1.0
05_03_0035 - 7592177-7592938 30 1.4
05_03_0033 - 7585267-7586028 30 1.4
01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345 30 1.4
01_01_0652 + 4975091-4975585 29 2.4
02_01_0377 + 2728892-2729187,2729483-2729544,2730516-2730570,273... 28 5.6
11_03_0135 - 10547460-10547558,10547926-10548086,10548183-105483... 28 7.4
09_02_0328 - 7293547-7293855,7294161-7294274,7294348-7294429,729... 28 7.4
06_01_1010 + 7866158-7866661 28 7.4
01_01_0284 - 2357085-2357244,2357354-2357730,2359114-2359371 28 7.4
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636... 27 9.7
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478 27 9.7
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 128 bits (308), Expect = 5e-30
Identities = 63/109 (57%), Positives = 73/109 (66%)
Frame = -1
Query: 582 RPTRPDKARRLGLPC*TRLCCIQNPVRRGGRKRPVAKGATYGKPKSHGVNQLKPTRNLQS 403
RPTRPDKARRLG + VRRGGRKRPV KG YGKPK G+ QLK RN +S
Sbjct: 146 RPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRS 205
Query: 402 IAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDPSHKAIRRDPKIN 256
+AEE L+SYWV +DS+YKYFE+ILVD +H AIR DP+IN
Sbjct: 206 VAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDVAHSAIRNDPRIN 254
Score = 62.5 bits (145), Expect = 3e-10
Identities = 31/51 (60%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Frame = -3
Query: 241 VHKHREMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 92
VHKHRE+RGLTSAG+ RGL GKGH + + + SRRA W R T+ LRR R
Sbjct: 260 VHKHRELRGLTSAGKKYRGLRGKGHTHHKAR-PSRRATWKRNQTVSLRRYR 309
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 128 bits (308), Expect = 5e-30
Identities = 63/109 (57%), Positives = 73/109 (66%)
Frame = -1
Query: 582 RPTRPDKARRLGLPC*TRLCCIQNPVRRGGRKRPVAKGATYGKPKSHGVNQLKPTRNLQS 403
RPTRPDKARRLG + VRRGGRKRPV KG YGKPK G+ QLK RN +S
Sbjct: 41 RPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRS 100
Query: 402 IAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDPSHKAIRRDPKIN 256
+AEE L+SYWV +DS+YKYFE+ILVD +H AIR DP+IN
Sbjct: 101 VAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDVAHSAIRNDPRIN 149
Score = 62.5 bits (145), Expect = 3e-10
Identities = 31/51 (60%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Frame = -3
Query: 241 VHKHREMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 92
VHKHRE+RGLTSAG+ RGL GKGH + + + SRRA W R T+ LRR R
Sbjct: 155 VHKHRELRGLTSAGKKYRGLRGKGHTHHKAR-PSRRATWKRNQTVSLRRYR 204
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 49.6 bits (113), Expect(2) = 7e-10
Identities = 22/33 (66%), Positives = 23/33 (69%)
Frame = -1
Query: 510 PVRRGGRKRPVAKGATYGKPKSHGVNQLKPTRN 412
P RRGGRKRPV KG Y KPK G+ QLK RN
Sbjct: 260 PSRRGGRKRPVHKGIVYSKPKHQGITQLKFQRN 292
Score = 31.5 bits (68), Expect(2) = 7e-10
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = -1
Query: 315 FEVILVDPSHKAIRRDPK 262
FE+ILVD +H AIR DPK
Sbjct: 299 FEIILVDVAHSAIRDDPK 316
>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/65 (24%), Positives = 33/65 (50%)
Frame = +2
Query: 32 SICIQK*ANGKSLTVLDRCLSFAT*LKSVASEPSCPA*ASLCLRVSMSLAETSGAATSRS 211
++ +Q ++ S++V+D CL S+A CP A++ L ++ + S +AT
Sbjct: 1958 TLFLQGCSSKDSVSVIDECLKLLFLFHSLAQSKKCPQEATMLLLDALLMVFYSSSATGSQ 2017
Query: 212 QTTHL 226
+ T +
Sbjct: 2018 ELTEV 2022
>05_03_0035 - 7592177-7592938
Length = 253
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 617 EPSVXSYAPAXPGPQGRTKPED*AYRAKQ 531
EP SY+ A PGP+ KPE A A Q
Sbjct: 66 EPKSDSYSQAKPGPKDEPKPEPEAMSASQ 94
>05_03_0033 - 7585267-7586028
Length = 253
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 617 EPSVXSYAPAXPGPQGRTKPED*AYRAKQ 531
EP SY+ A PGP+ KPE A A Q
Sbjct: 66 EPKSDSYSQAKPGPKDEPKPEPEAMSASQ 94
>01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345
Length = 304
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 220 RGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRR 98
+ L GR + G G + +GG RR AW RR + R
Sbjct: 136 KALVGVGRRAAGAGLQAVVPEARGGERRRAWRRRGLVATLR 176
>01_01_0652 + 4975091-4975585
Length = 164
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 208 SAGRSSRGLGKGHRYSQTKGGSRRAAW 128
+AG+ GKG R + +GG RR W
Sbjct: 37 AAGKRREAAGKGGRQREARGGGRRMRW 63
>02_01_0377 +
2728892-2729187,2729483-2729544,2730516-2730570,
2730784-2730858,2730980-2731054,2731155-2731202,
2731548-2732357,2732450-2732498,2733157-2733266,
2733381-2733488,2733920-2733980
Length = 582
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/65 (33%), Positives = 28/65 (43%)
Frame = -1
Query: 585 PRPTRPDKARRLGLPC*TRLCCIQNPVRRGGRKRPVAKGATYGKPKSHGVNQLKPTRNLQ 406
P PT D+AR + LP T C ++P R GR P G P G + +P R
Sbjct: 19 PPPTNDDRARAVDLPSPTPECDDRSPRRELGRS-PEDHGVPLPPPPPLGSS--RPERLAS 75
Query: 405 SIAEE 391
EE
Sbjct: 76 DRPEE 80
>11_03_0135 -
10547460-10547558,10547926-10548086,10548183-10548306,
10548566-10548729,10549803-10549883,10549973-10550097,
10550200-10550430,10550566-10550588,10551055-10551539,
10551678-10552075,10552903-10552988,10553120-10553397,
10553494-10553714,10553927-10554018,10554148-10554213,
10555855-10556022
Length = 933
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -1
Query: 519 IQNPVRRGGRKRPVAKGATYGKPKS-HGVNQLKPTRNLQSIAEE 391
+ P+R+ G +AK A++ KPK VN+ KP+ + + E
Sbjct: 471 LSTPMRKEGPMGILAKSASFKKPKCFEPVNKAKPSTVMNPLVSE 514
>09_02_0328 -
7293547-7293855,7294161-7294274,7294348-7294429,
7295318-7295401,7296199-7296399,7296516-7296853,
7296968-7297084
Length = 414
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 217 GLTSAGRSSRGLGKGHRYSQTKGGSRRAA 131
G++ +G G G+G KGGSR AA
Sbjct: 174 GVSGSGAGGGGRGRGRGSDDAKGGSRAAA 202
>06_01_1010 + 7866158-7866661
Length = 167
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 229 REMRGLTSAGRSSRGLGKGHRYSQTKGGSRR 137
R+ G+ G + G GKG R+ GG RR
Sbjct: 57 RKEAGMPGGGARAPGSGKGRRWRPEHGGKRR 87
>01_01_0284 - 2357085-2357244,2357354-2357730,2359114-2359371
Length = 264
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -3
Query: 262 DQLIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRR 119
D+ + A HK+ EMRG+T + H Y K WLRR
Sbjct: 215 DENLQRAFHKYLEMRGITPMATNFL-----HEYMINKDSREYLIWLRR 257
>04_03_0673 -
18562497-18563010,18563080-18563471,18563553-18563649,
18563977-18564149,18564349-18564485,18564806-18564872
Length = 459
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -3
Query: 496 WPQASSC*G-CHLWQAQEPWCQPVEAH 419
WPQ CHL Q +EPW ++AH
Sbjct: 46 WPQDQRWYQHCHLQQEEEPWRCQIKAH 72
>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
Length = 772
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 403 GLKVARGLQLVDTMALGLAISGTLSNWTLAATT 501
G +V G++ V +ALGL ++GT W L T
Sbjct: 591 GSEVPLGVEKVHELALGLELAGTRFLWALRKPT 623
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,561,747
Number of Sequences: 37544
Number of extensions: 392717
Number of successful extensions: 1094
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -