Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0118.Seq
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.) 136 2e-32
SB_58287| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_42144| Best HMM Match : v110 (HMM E-Value=5.2) 29 2.5
SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66) 29 3.3
SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33) 29 3.3
SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_6379| Best HMM Match : Proteasome (HMM E-Value=0) 28 5.7
>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 136 bits (328), Expect = 2e-32
Identities = 68/109 (62%), Positives = 77/109 (70%)
Frame = -1
Query: 582 RPTRPDKARRLGLPC*TRLCCIQNPVRRGGRKRPVAKGATYGKPKSHGVNQLKPTRNLQS 403
RPTRPDKARRLG + VRRGGRKRPV KGATYGKP + GVN+LK R+L+S
Sbjct: 41 RPTRPDKARRLGYKAKQGFVIYRVRVRRGGRKRPVPKGATYGKPVNQGVNELKFQRSLRS 100
Query: 402 IAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDPSHKAIRRDPKIN 256
+AEE L+SYWV QDS YKYFEVI+VDP HKAIRRD +IN
Sbjct: 101 VAEERAGRYCGGLRVLNSYWVGQDSIYKYFEVIMVDPFHKAIRRDARIN 149
Score = 72.5 bits (170), Expect = 3e-13
Identities = 32/54 (59%), Positives = 38/54 (70%)
Frame = -3
Query: 253 IVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 92
I HKHRE+RGLT+AG +RG+ KGH Y++ G SRRA W R NTL LRR R
Sbjct: 151 ICKPTHKHRELRGLTAAGTKNRGMRKGHNYNKVIGSSRRANWKRHNTLSLRRYR 204
Score = 33.1 bits (72), Expect = 0.20
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -3
Query: 646 RFLMRVRVWQNRQXTRMHRRSQ 581
RFL+RVR WQ RQ T +HR ++
Sbjct: 20 RFLLRVRCWQYRQLTAIHRATR 41
>SB_58287| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1021
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 184 DLGSCDQPKSDHASRDAYVQHSRSVDLRIATNGLV*RVHEDN 309
D GS DQ ++DH S D S+D A NG + +V D+
Sbjct: 533 DHGSIDQMQADHVSIDQVQADHGSIDQVQADNGSIDQVQADH 574
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 184 DLGSCDQPKSDHASRDAYVQHSRSVDLRIATNGLV*RVHEDN 309
D GS DQ ++DH S D S+D A +G + +V DN
Sbjct: 523 DHGSIDQVQADHGSIDQMQADHVSIDQVQADHGSIDQVQADN 564
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 184 DLGSCDQPKSDHASRDAYVQHSRSVDLRIATNGLV*RVHEDN 309
D GS DQ ++DH S D S+D A +G + +V D+
Sbjct: 483 DHGSIDQVQADHGSIDQVQADHGSIDQMQADHGSIDQVQADH 524
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 184 DLGSCDQPKSDHASRDAYVQHSRSVDLRIATNGLV*RVHEDNLEI 318
D GS DQ ++DH S D S+D A +G + ++ D++ I
Sbjct: 503 DHGSIDQMQADHGSIDQVQADHGSIDQVQADHGSIDQMQADHVSI 547
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 184 DLGSCDQPKSDHASRDAYVQHSRSVDLRIATNGLV*RVHEDN 309
D GS DQ ++DH S D S+D A +G + +V D+
Sbjct: 493 DHGSIDQVQADHGSIDQMQADHGSIDQVQADHGSIDQVQADH 534
>SB_42144| Best HMM Match : v110 (HMM E-Value=5.2)
Length = 226
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 522 CIQNPVRRGGRKRPVAKGATYGKPKSHGVNQLKPTRNLQSIAE 394
C Q + GG P + + G P HGVN L ++ ++++E
Sbjct: 57 CEQQKIDDGGLIAPSLEDSEAGNPDRHGVNPLHKRKDNKTVSE 99
>SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66)
Length = 1709
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 477 QLDACGHHVAQDSEYNITLFSTVSLVFGLCP 569
Q + CG V +D+E + +L S L + +CP
Sbjct: 467 QENECGEEVLRDNELSCSLISLYPLFYSICP 497
>SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)
Length = 300
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 241 VHKHREMRGLTSAGRSSRGLGKGHRYSQTK 152
+H + ++GLT A S LG GH YS+ K
Sbjct: 61 MHFDKMIKGLTGAMASKAQLGLGHSYSRAK 90
>SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 931
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 321 CMKNLVQPSKSSTHGDHRNDGQHAPQ-QWIEGCAWASTG*HHGSW 452
C + P ++S+H +RN GQ A + Q A A+ G +G W
Sbjct: 883 CCRRWKSPGETSSHTVYRNKGQDAGEIQRTYTIAGANPGFQNGGW 927
>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
Length = 909
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 324 MKNLVQPSKSSTHGDHRNDGQHAPQQWIEGCAW 422
++NL P + T G G + P+ W+ GCAW
Sbjct: 423 LQNLYIPPEGVT-GIPLGVGNYGPEAWLLGCAW 454
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,995,949
Number of Sequences: 59808
Number of extensions: 435525
Number of successful extensions: 1102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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