Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0118.Seq
         (648 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69976-1|CAA93816.1|  204|Anopheles gambiae ribosomal protein RL...   137   3e-34
DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    23   6.3  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    23   8.3  

>Z69976-1|CAA93816.1|  204|Anopheles gambiae ribosomal protein RL10
           protein.
          Length = 204

 Score =  137 bits (331), Expect = 3e-34
 Identities = 67/110 (60%), Positives = 77/110 (70%)
 Frame = -1

Query: 585 PRPTRPDKARRLGLPC*TRLCCIQNPVRRGGRKRPVAKGATYGKPKSHGVNQLKPTRNLQ 406
           PRP RP + RRLG    T     +  VR GGRKRPV KG TYGKPKSHGVNQLKP R LQ
Sbjct: 40  PRPWRPTRLRRLGYKAKTGFSIFRIRVRCGGRKRPVHKGCTYGKPKSHGVNQLKPYRCLQ 99

Query: 405 SIAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDPSHKAIRRDPKIN 256
           S+AEE           L+SYWVAQD+++KYFEVI+VDP + AIRRDP +N
Sbjct: 100 SVAEERVGGRLGGLRVLNSYWVAQDAAHKYFEVIMVDPPNNAIRRDPNVN 149



 Score = 90.2 bits (214), Expect = 5e-20
 Identities = 43/54 (79%), Positives = 47/54 (87%)
 Frame = -3

Query: 253 IVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 92
           I NAVHKHRE+RGLTSAG+SSRGLGK +RYSQT GGSRRAA +RRN L LRR R
Sbjct: 151 ICNAVHKHRELRGLTSAGKSSRGLGKAYRYSQTIGGSRRAAGVRRNRLHLRRYR 204



 Score = 33.9 bits (74), Expect = 0.004
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = -3

Query: 646 RFLMRVRVWQNRQXTRMHR 590
           R+L+RVR WQ RQ TR HR
Sbjct: 20  RYLLRVRAWQYRQMTRFHR 38


>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 627 GYGRTVSXLVCTGXPRPTRPDKARRLGLP 541
           G   T S  V TG P P+R   A  +G P
Sbjct: 755 GSSSTASSSVSTGMPSPSRSAFADGIGSP 783


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 190 RGLGKGHRYSQTKGGSRR 137
           +G+G GH Y   + G RR
Sbjct: 320 KGVGSGHLYYYEENGDRR 337


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 688,874
Number of Sequences: 2352
Number of extensions: 13180
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63977715
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)