Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0118.Seq
         (648 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094841-1|AAM11194.1|  204|Drosophila melanogaster RE01373p pro...   153   2e-37
AF030251-1|AAB84223.1|  204|Drosophila melanogaster ribosomal L1...   153   2e-37

>AY094841-1|AAM11194.1|  204|Drosophila melanogaster RE01373p
           protein.
          Length = 204

 Score =  153 bits (371), Expect = 2e-37
 Identities = 75/110 (68%), Positives = 80/110 (72%)
 Frame = -1

Query: 585 PRPTRPDKARRLGLPC*TRLCCIQNPVRRGGRKRPVAKGATYGKPKSHGVNQLKPTRNLQ 406
           PRPTRPDKARRLG          +  VRRGGRKRPV KG TYGKPKSHGVNQLKP R LQ
Sbjct: 40  PRPTRPDKARRLGYRAKQGFVIYRIRVRRGGRKRPVPKGCTYGKPKSHGVNQLKPYRGLQ 99

Query: 405 SIAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDPSHKAIRRDPKIN 256
           SIAEE           L+SYW+AQD+SYKYFEVIL+D  H AIRRDPKIN
Sbjct: 100 SIAEERVGRRLGGLRVLNSYWIAQDASYKYFEVILIDTHHSAIRRDPKIN 149



 Score = 87.0 bits (206), Expect = 2e-17
 Identities = 39/54 (72%), Positives = 45/54 (83%)
 Frame = -3

Query: 253 IVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 92
           I   VHKHRE+RGLTSAG+SSRG+GKG+RYSQT GGSRRAAW R+N   + RKR
Sbjct: 151 ICKHVHKHRELRGLTSAGKSSRGIGKGYRYSQTIGGSRRAAWKRKNREHMHRKR 204



 Score = 34.7 bits (76), Expect = 0.11
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = -3

Query: 646 RFLMRVRVWQNRQXTRMHR 590
           R+L+R+RVWQ RQ T++HR
Sbjct: 20  RYLLRIRVWQYRQLTKLHR 38


>AF030251-1|AAB84223.1|  204|Drosophila melanogaster ribosomal L15
           (YL10) protein homologueprotein.
          Length = 204

 Score =  153 bits (371), Expect = 2e-37
 Identities = 75/110 (68%), Positives = 80/110 (72%)
 Frame = -1

Query: 585 PRPTRPDKARRLGLPC*TRLCCIQNPVRRGGRKRPVAKGATYGKPKSHGVNQLKPTRNLQ 406
           PRPTRPDKARRLG          +  VRRGGRKRPV KG TYGKPKSHGVNQLKP R LQ
Sbjct: 40  PRPTRPDKARRLGYRAKQGFVIYRIRVRRGGRKRPVPKGCTYGKPKSHGVNQLKPYRGLQ 99

Query: 405 SIAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDPSHKAIRRDPKIN 256
           SIAEE           L+SYW+AQD+SYKYFEVIL+D  H AIRRDPKIN
Sbjct: 100 SIAEERVGRRLGGLRVLNSYWIAQDASYKYFEVILIDTHHSAIRRDPKIN 149



 Score = 87.0 bits (206), Expect = 2e-17
 Identities = 39/54 (72%), Positives = 45/54 (83%)
 Frame = -3

Query: 253 IVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 92
           I   VHKHRE+RGLTSAG+SSRG+GKG+RYSQT GGSRRAAW R+N   + RKR
Sbjct: 151 ICKHVHKHRELRGLTSAGKSSRGIGKGYRYSQTIGGSRRAAWKRKNREHMHRKR 204



 Score = 34.7 bits (76), Expect = 0.11
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = -3

Query: 646 RFLMRVRVWQNRQXTRMHR 590
           R+L+R+RVWQ RQ T++HR
Sbjct: 20  RYLLRIRVWQYRQLTKLHR 38


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,003,031
Number of Sequences: 53049
Number of extensions: 625909
Number of successful extensions: 1852
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1848
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)