Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0118.Seq
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   129   2e-30
Z70718-5|CAA94670.1|  197|Caenorhabditis elegans Hypothetical pr...    29   2.1  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  129 bits (311), Expect = 2e-30
 Identities = 60/107 (56%), Positives = 76/107 (71%)
 Frame = -1

Query: 585 PRPTRPDKARRLGLPC*TRLCCIQNPVRRGGRKRPVAKGATYGKPKSHGVNQLKPTRNLQ 406
           PRPTRP+KARRLG          +  VRRG RKRPV KG TYGKPK+HGVN+LK  ++ Q
Sbjct: 40  PRPTRPEKARRLGYRAKQGFVVYRVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQ 99

Query: 405 SIAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDPSHKAIRRDP 265
           ++AE            L+SYWVA+DS+YK++EV+L+DP HKAIRR+P
Sbjct: 100 AVAEGRAGRRLGSLRVLNSYWVAEDSTYKFYEVVLIDPFHKAIRRNP 146



 Score = 77.8 bits (183), Expect = 6e-15
 Identities = 36/56 (64%), Positives = 40/56 (71%)
 Frame = -3

Query: 259 QLIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 92
           Q I   VHKHRE RGLTSAGR SRGLGKG R+S T+GGS+   W R+NT    RKR
Sbjct: 149 QWITKPVHKHREQRGLTSAGRKSRGLGKGWRFSATRGGSQAKNWKRKNTKVFHRKR 204



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 646 RFLMRVRVWQNRQXTRMHR 590
           R+L+R+R W  RQ + +HR
Sbjct: 20  RYLLRIRTWHYRQLSAVHR 38


>Z70718-5|CAA94670.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G2.8 protein.
          Length = 197

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = -3

Query: 319 VFRGYPRGPVTQGHSSRS*DQLIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSR 140
           V R   RG V++  SSR     +     + R  +   S  RS R   +   YS+++ GSR
Sbjct: 94  VVRSASRGSVSRRSSSRG---SVYGRTGRSRSSKRSRSRSRS-RSRSRSRSYSRSRSGSR 149

Query: 139 RAA---WLRRNTLQLRRKR 92
           R++     RR++L+ R +R
Sbjct: 150 RSSRRRSRRRSSLKARGRR 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,984,373
Number of Sequences: 27780
Number of extensions: 304838
Number of successful extensions: 768
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)