Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0117.Seq
(548 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q05639 Cluster: Elongation factor 1-alpha 2; n=8397; ro... 116 3e-25
UniRef50_Q2F837 Cluster: Eukaryotic translation elongation facto... 116 4e-25
UniRef50_Q5EMT9 Cluster: Elongation factor 1-alpha-like protein;... 110 2e-23
UniRef50_Q6WZ47 Cluster: Elongation factor-1 alpha; n=3; Coeloma... 103 4e-21
UniRef50_P13905 Cluster: Elongation factor 1-alpha; n=2224; cell... 98 1e-19
UniRef50_UPI0000D9D957 Cluster: PREDICTED: similar to eukaryotic... 87 3e-16
UniRef50_UPI0000F308E4 Cluster: UPI0000F308E4 related cluster; n... 82 1e-14
UniRef50_A4VDD2 Cluster: Elongation factor 1-alpha; n=1; Tetrahy... 77 3e-13
UniRef50_UPI0000EB0538 Cluster: UPI0000EB0538 related cluster; n... 77 4e-13
UniRef50_P35021 Cluster: Elongation factor 1-alpha; n=53; cellul... 75 1e-12
UniRef50_UPI00006CC36B Cluster: Elongation factor Tu C-terminal ... 67 3e-10
UniRef50_UPI0000EB403C Cluster: UPI0000EB403C related cluster; n... 67 3e-10
UniRef50_O93729 Cluster: Elongation factor 1-alpha; n=20; Archae... 65 9e-10
UniRef50_A7D4X8 Cluster: Translation elongation factor EF-1, sub... 63 5e-09
UniRef50_A5X901 Cluster: Elongation factor 1-alpha; n=2; Chilodo... 60 3e-08
UniRef50_Q22GX7 Cluster: Elongation factor Tu C-terminal domain ... 60 4e-08
UniRef50_A7P1C4 Cluster: Chromosome chr19 scaffold_4, whole geno... 56 5e-07
UniRef50_UPI0000EBC365 Cluster: PREDICTED: hypothetical protein;... 55 9e-07
UniRef50_UPI00005A2F18 Cluster: PREDICTED: similar to eukaryotic... 55 1e-06
UniRef50_Q2U0M0 Cluster: Translation elongation factor EF-1 alph... 54 2e-06
UniRef50_UPI00005A57EA Cluster: PREDICTED: similar to eukaryotic... 49 6e-05
UniRef50_P15170 Cluster: G1 to S phase transition protein 1 homo... 49 6e-05
UniRef50_Q4QGW5 Cluster: Eukaryotic release factor 3, putative; ... 47 3e-04
UniRef50_Q8IIC9 Cluster: Translation elongation factor EF-1, sub... 46 8e-04
UniRef50_Q23TC1 Cluster: Elongation factor Tu C-terminal domain ... 44 0.002
UniRef50_Q259E7 Cluster: H0801D08.2 protein; n=5; Oryza sativa|R... 44 0.002
UniRef50_UPI0000499ED8 Cluster: guanine nucleotide regulatory pr... 43 0.005
UniRef50_Q9LM39 Cluster: T10O22.4; n=7; Magnoliophyta|Rep: T10O2... 42 0.007
UniRef50_A2WJZ4 Cluster: Putative uncharacterized protein; n=1; ... 42 0.007
UniRef50_Q86NR4 Cluster: RE29053p; n=5; Diptera|Rep: RE29053p - ... 42 0.007
UniRef50_Q9HGI4 Cluster: Eukaryotic peptide chain release factor... 42 0.009
UniRef50_P50257 Cluster: Elongation factor 1-alpha S; n=1; Porph... 42 0.012
UniRef50_O45622 Cluster: Putative uncharacterized protein; n=2; ... 40 0.038
UniRef50_A7RM15 Cluster: Predicted protein; n=3; Eumetazoa|Rep: ... 40 0.038
UniRef50_Q07089 Cluster: SUP35 protein; n=3; Saccharomyces cerev... 40 0.038
UniRef50_P05453 Cluster: Eukaryotic peptide chain release factor... 40 0.038
UniRef50_A7P6A6 Cluster: Chromosome chr9 scaffold_7, whole genom... 40 0.050
UniRef50_A0BK03 Cluster: Chromosome undetermined scaffold_111, w... 39 0.066
UniRef50_O13354 Cluster: Eukaryotic peptide chain release factor... 39 0.066
UniRef50_Q9Y450 Cluster: HBS1-like protein; n=43; Euteleostomi|R... 39 0.088
UniRef50_A4ZCD1 Cluster: GTP-binding protein; n=9; Magnoliophyta... 38 0.20
UniRef50_Q6JIY6 Cluster: Translation elongation factor 1 alpha; ... 37 0.35
UniRef50_UPI0000D55B6A Cluster: PREDICTED: similar to CG1898-PA;... 36 0.47
UniRef50_Q9NCN7 Cluster: Eukaryotic release factor 3 GTPase subu... 36 0.82
UniRef50_O74718 Cluster: Eukaryotic peptide chain release factor... 35 1.1
UniRef50_Q96WS7 Cluster: Eukaryotic release factor 3; n=1; Pneum... 33 3.3
UniRef50_Q5KFJ4 Cluster: Translation release factor, putative; n... 33 4.4
UniRef50_Q9NCN5 Cluster: Eukaryotic release factor 3 GTPase subu... 33 5.8
>UniRef50_Q05639 Cluster: Elongation factor 1-alpha 2; n=8397;
root|Rep: Elongation factor 1-alpha 2 - Homo sapiens
(Human)
Length = 463
Score = 116 bits (280), Expect = 3e-25
Identities = 55/90 (61%), Positives = 66/90 (73%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
FAE+KEK+DRR+GK E NPKS+KS DAAIV + P KP+CVESF ++PP GR A R MRQ
Sbjct: 372 FAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQ 431
Query: 327 TVAVXVIKAVNFKEAGGXKVTKXXERPPRA 238
TVAV VIK V K G KVTK ++ +A
Sbjct: 432 TVAVGVIKNVEKKSGGAGKVTKSAQKAQKA 461
>UniRef50_Q2F837 Cluster: Eukaryotic translation elongation factor 1
alpha 1; n=25; Coelomata|Rep: Eukaryotic translation
elongation factor 1 alpha 1 - Homo sapiens (Human)
Length = 93
Score = 116 bits (279), Expect = 4e-25
Identities = 55/90 (61%), Positives = 68/90 (75%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
FAE+KEK+DRR+GK E PK +KS DAAIV++ P KP+CVESF ++PP GR A R MRQ
Sbjct: 3 FAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQ 62
Query: 327 TVAVXVIKAVNFKEAGGXKVTKXXERPPRA 238
TVAV VIKAV+ K AG KVTK ++ +A
Sbjct: 63 TVAVGVIKAVDKKAAGAGKVTKSAQKAQKA 92
>UniRef50_Q5EMT9 Cluster: Elongation factor 1-alpha-like protein;
n=6; Fungi/Metazoa group|Rep: Elongation factor
1-alpha-like protein - Magnaporthe grisea (Rice blast
fungus) (Pyricularia grisea)
Length = 473
Score = 110 bits (264), Expect = 2e-23
Identities = 54/82 (65%), Positives = 63/82 (76%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
F+EI EK+DRRTGKS E NPK IKS DAAIV + PSKP+CVE+F E+PP GR A R MRQ
Sbjct: 384 FSEILEKLDRRTGKSIESNPKFIKSGDAAIVKMIPSKPMCVETFSEYPPLGRFAVRDMRQ 443
Query: 327 TVAVXVIKAVNFKEAGGXKVTK 262
TVAV VIK+V+ + KVTK
Sbjct: 444 TVAVGVIKSVDKSQGTQGKVTK 465
>UniRef50_Q6WZ47 Cluster: Elongation factor-1 alpha; n=3;
Coelomata|Rep: Elongation factor-1 alpha - Anduzedoras
oxyrhynchus
Length = 257
Score = 103 bits (246), Expect = 4e-21
Identities = 47/73 (64%), Positives = 59/73 (80%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
FAE+KEK+DRR+GK E NPK++KS DAAI+ + P KP+CVESF ++PP GR A R MRQ
Sbjct: 185 FAELKEKIDRRSGKKLEDNPKNLKSGDAAIILMIPGKPMCVESFSKYPPPGRFAARDMRQ 244
Query: 327 TVAVXVIKAVNFK 289
TVAV VIK+V+ K
Sbjct: 245 TVAVGVIKSVDKK 257
>UniRef50_P13905 Cluster: Elongation factor 1-alpha; n=2224;
cellular organisms|Rep: Elongation factor 1-alpha -
Arabidopsis thaliana (Mouse-ear cress)
Length = 449
Score = 97.9 bits (233), Expect = 1e-19
Identities = 46/82 (56%), Positives = 60/82 (73%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
F+EI K+DRR+GK E PK +K+ DA +V + P+KP+ VE+F E+PP GR A R MRQ
Sbjct: 360 FSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQ 419
Query: 327 TVAVXVIKAVNFKEAGGXKVTK 262
TVAV VIK+V+ K+ G KVTK
Sbjct: 420 TVAVGVIKSVDKKDPTGAKVTK 441
>UniRef50_UPI0000D9D957 Cluster: PREDICTED: similar to eukaryotic
translation elongation factor 1 alpha 2; n=1; Macaca
mulatta|Rep: PREDICTED: similar to eukaryotic
translation elongation factor 1 alpha 2 - Macaca mulatta
Length = 151
Score = 86.6 bits (205), Expect = 3e-16
Identities = 40/77 (51%), Positives = 55/77 (71%)
Frame = -3
Query: 519 HCLXFAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXR 340
HC AE+KEK+D +GK+ E +PK + ++DAAI+++ P K +CVESF ++PP G A
Sbjct: 55 HCGKVAELKEKIDCNSGKNLEYDPKLLNADDAAILDMVPGKSMCVESFSDWPPLGCFAVC 114
Query: 339 XMRQTVAVXVIKAVNFK 289
MRQTVA VIKAV+ K
Sbjct: 115 DMRQTVATGVIKAVDKK 131
>UniRef50_UPI0000F308E4 Cluster: UPI0000F308E4 related cluster; n=3;
Laurasiatheria|Rep: UPI0000F308E4 UniRef100 entry - Bos
Taurus
Length = 428
Score = 81.8 bits (193), Expect = 1e-14
Identities = 42/82 (51%), Positives = 51/82 (62%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
FAE+KEK+D +GK E PK KS DAA+V+ P KP C +SF ++ P G A R Q
Sbjct: 338 FAELKEKLDCHSGKKLEDGPKLWKSGDAALVDTVPGKPTCADSFSKYLPLGHFAVRDTWQ 397
Query: 327 TVAVXVIKAVNFKEAGGXKVTK 262
TV VIKAV+ AG KVTK
Sbjct: 398 TVPAGVIKAVDKTAAGAVKVTK 419
>UniRef50_A4VDD2 Cluster: Elongation factor 1-alpha; n=1;
Tetrahymena thermophila SB210|Rep: Elongation factor
1-alpha - Tetrahymena thermophila SB210
Length = 356
Score = 77.0 bits (181), Expect = 3e-13
Identities = 36/73 (49%), Positives = 48/73 (65%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
F EI +K+DR+TG S E NP IK+ + AIV L P K +CVE+F P GR R M+
Sbjct: 284 FEEIVKKIDRKTGASIEENPSFIKNGECAIVKLKPRKAVCVETFANNAPLGRFIIRDMKV 343
Query: 327 TVAVXVIKAVNFK 289
VA+ +IK+VN+K
Sbjct: 344 VVAIGIIKSVNYK 356
>UniRef50_UPI0000EB0538 Cluster: UPI0000EB0538 related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB0538 UniRef100
entry - Canis familiaris
Length = 357
Score = 76.6 bits (180), Expect = 4e-13
Identities = 43/86 (50%), Positives = 56/86 (65%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
FAE+K++ +GK E PK +KS DAA V++ P KP+CVESF P GR A MRQ
Sbjct: 270 FAELKKR--DHSGKKLEDGPKFLKSGDAAFVDMVPGKPMCVESFS--PLLGRFAVCDMRQ 325
Query: 327 TVAVXVIKAVNFKEAGGXKVTKXXER 250
TVAV VI+AV+ K AG V+K ++
Sbjct: 326 TVAVGVIQAVDKKAAGAGHVSKSIQK 351
>UniRef50_P35021 Cluster: Elongation factor 1-alpha; n=53; cellular
organisms|Rep: Elongation factor 1-alpha - Sulfolobus
solfataricus
Length = 435
Score = 74.9 bits (176), Expect = 1e-12
Identities = 34/66 (51%), Positives = 43/66 (65%)
Frame = -3
Query: 504 AEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQT 325
+E+ K+D RTG+ E NP+ +K D AIV P KPLCVE + EFPP GR A R M +T
Sbjct: 359 SELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKT 418
Query: 324 VAVXVI 307
V V +I
Sbjct: 419 VGVGII 424
>UniRef50_UPI00006CC36B Cluster: Elongation factor Tu C-terminal
domain containing protein; n=1; Tetrahymena thermophila
SB210|Rep: Elongation factor Tu C-terminal domain
containing protein - Tetrahymena thermophila SB210
Length = 441
Score = 66.9 bits (156), Expect = 3e-10
Identities = 31/74 (41%), Positives = 45/74 (60%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
F +I KV+R+T + P IK+ +AA+V + P+KPL VE F + PP GR R M
Sbjct: 368 FIDILSKVERKTAQQISNKPDYIKNGEAAVVRVRPTKPLSVEKFSQCPPLGRFIVRDMNT 427
Query: 327 TVAVXVIKAVNFKE 286
VA+ +IK V +K+
Sbjct: 428 IVAIGIIKEVVYKQ 441
>UniRef50_UPI0000EB403C Cluster: UPI0000EB403C related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB403C UniRef100
entry - Canis familiaris
Length = 300
Score = 66.9 bits (156), Expect = 3e-10
Identities = 36/82 (43%), Positives = 50/82 (60%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
F E+KEK++ +GK P +KS AA V++ P KP+CVES ++ P + + Q
Sbjct: 211 FVELKEKINCHSGKKLVDGPNFLKSGVAAFVDMVPGKPMCVESSSDY-PLHHFSICDITQ 269
Query: 327 TVAVXVIKAVNFKEAGGXKVTK 262
VAV VIKAV+ + AG KVTK
Sbjct: 270 MVAVGVIKAVDKETAGAGKVTK 291
>UniRef50_O93729 Cluster: Elongation factor 1-alpha; n=20;
Archaea|Rep: Elongation factor 1-alpha - Pyrobaculum
aerophilum
Length = 444
Score = 65.3 bits (152), Expect = 9e-10
Identities = 31/68 (45%), Positives = 41/68 (60%)
Frame = -3
Query: 501 EIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTV 322
E+ K+D RTG++ E P+ IK D AIV + P KP+ E F +FPP GR A R M +T+
Sbjct: 369 ELVSKLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTI 428
Query: 321 AVXVIKAV 298
A I V
Sbjct: 429 AAGQILEV 436
>UniRef50_A7D4X8 Cluster: Translation elongation factor EF-1,
subunit alpha; n=1; Halorubrum lacusprofundi ATCC
49239|Rep: Translation elongation factor EF-1, subunit
alpha - Halorubrum lacusprofundi ATCC 49239
Length = 540
Score = 62.9 bits (146), Expect = 5e-09
Identities = 31/69 (44%), Positives = 40/69 (57%)
Frame = -3
Query: 501 EIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTV 322
EI +K+D +G+ E NP IKS DAA+V + P KPL +E E P G A R M QT+
Sbjct: 470 EINQKIDPASGEVAEENPDFIKSGDAAVVTVRPQKPLSIEPSGEIPELGSFAIRDMGQTI 529
Query: 321 AVXVIKAVN 295
A + VN
Sbjct: 530 AAGKVLEVN 538
>UniRef50_A5X901 Cluster: Elongation factor 1-alpha; n=2;
Chilodonella uncinata|Rep: Elongation factor 1-alpha -
Chilodonella uncinata
Length = 403
Score = 60.1 bits (139), Expect = 3e-08
Identities = 27/56 (48%), Positives = 39/56 (69%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXR 340
F EI+ ++DR+TGK E NP ++ DAAIV + P KP+ VE+F+++P GR A R
Sbjct: 345 FKEIRARLDRKTGKVVEHNPAYTRNGDAAIVLMEPIKPVAVEAFKKYPALGRFAIR 400
>UniRef50_Q22GX7 Cluster: Elongation factor Tu C-terminal domain
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: Elongation factor Tu C-terminal domain
containing protein - Tetrahymena thermophila SB210
Length = 432
Score = 59.7 bits (138), Expect = 4e-08
Identities = 25/67 (37%), Positives = 39/67 (58%)
Frame = -3
Query: 498 IKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTVA 319
I K+D RTG E NP S+ +A+ + P +PLC+E + ++PP GR + QT A
Sbjct: 360 IIHKIDNRTGIILEENPISVSKGGSALAEIEPLQPLCIEEYSQYPPLGRFILKDSDQTTA 419
Query: 318 VXVIKAV 298
V +++ V
Sbjct: 420 VGIVQKV 426
>UniRef50_A7P1C4 Cluster: Chromosome chr19 scaffold_4, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr19 scaffold_4, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 189
Score = 56.0 bits (129), Expect = 5e-07
Identities = 25/48 (52%), Positives = 32/48 (66%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFP 364
FAEI K+DRR GK E PK +K+ DA V + P+KP+ VE+F E P
Sbjct: 135 FAEILTKIDRRPGKELEKEPKFLKNGDARFVKMIPTKPMVVETFSESP 182
>UniRef50_UPI0000EBC365 Cluster: PREDICTED: hypothetical protein;
n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
Bos taurus
Length = 217
Score = 55.2 bits (127), Expect = 9e-07
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPP----------- 361
FAE +EK+D R+G E PK++KS +A ++ + KP+CV SF E PP
Sbjct: 115 FAEQREKLDWRSGMKPEDKPKALKSREAGVIQMILRKPVCVGSFLECPPLYKLQQQPTAW 174
Query: 360 ----------XGRXAXRXMRQTVAVXVIKAVNFKE 286
GR A + MRQTVAV VI A+ ++
Sbjct: 175 TVPSSSQLQGAGRFATQDMRQTVAVTVIIAIKKRQ 209
>UniRef50_UPI00005A2F18 Cluster: PREDICTED: similar to eukaryotic
translation elongation factor 1 alpha 2; n=1; Canis
lupus familiaris|Rep: PREDICTED: similar to eukaryotic
translation elongation factor 1 alpha 2 - Canis
familiaris
Length = 210
Score = 54.8 bits (126), Expect = 1e-06
Identities = 34/74 (45%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKP---LCVESFQEFPPXGRXAXRX 337
FAE+KEK DRR+G+ PK +K+ DAAIV + PSKP LCV
Sbjct: 118 FAELKEKTDRRSGRKLADGPKFLKAGDAAIVEMVPSKPTSNLCVLRASPTILLWTLCCCD 177
Query: 336 MRQTVAVXVIKAVN 295
RQTVAV V AV+
Sbjct: 178 RRQTVAVGVTLAVD 191
>UniRef50_Q2U0M0 Cluster: Translation elongation factor EF-1
alpha/Tu; n=1; Aspergillus oryzae|Rep: Translation
elongation factor EF-1 alpha/Tu - Aspergillus oryzae
Length = 534
Score = 54.4 bits (125), Expect = 2e-06
Identities = 26/55 (47%), Positives = 34/55 (61%)
Frame = -3
Query: 504 AEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXR 340
+ I K DRRTG+ TE +P SIK D AIV + +KP+CVE + + P GR R
Sbjct: 479 SRILHKKDRRTGRPTEQSPDSIKVGDCAIVEMVSTKPMCVEPYSKNPCLGRFIIR 533
>UniRef50_UPI00005A57EA Cluster: PREDICTED: similar to eukaryotic
translation elongation factor 1 alpha 2; n=2; Canis
lupus familiaris|Rep: PREDICTED: similar to eukaryotic
translation elongation factor 1 alpha 2 - Canis
familiaris
Length = 190
Score = 49.2 bits (112), Expect = 6e-05
Identities = 33/89 (37%), Positives = 45/89 (50%)
Frame = -3
Query: 504 AEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQT 325
AE+K K+D GK E PK +KS DAAI++ P P RQT
Sbjct: 120 AELKGKMDHSPGKKLEDGPKFLKSGDAAIIDTVPGNP-------------------TRQT 160
Query: 324 VAVXVIKAVNFKEAGGXKVTKXXERPPRA 238
V+V VI+AV+ + G K+TK +R +A
Sbjct: 161 VSVGVIEAVDERAVGAGKITKSAQRAQKA 189
>UniRef50_P15170 Cluster: G1 to S phase transition protein 1
homolog; n=77; Eukaryota|Rep: G1 to S phase transition
protein 1 homolog - Homo sapiens (Human)
Length = 499
Score = 49.2 bits (112), Expect = 6e-05
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = -3
Query: 486 VDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTVAV-XV 310
VD+++G+ ++ P+ +K + I L + +C+E+F++FP GR R +T+A+ V
Sbjct: 432 VDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKV 491
Query: 309 IKAVNFKE 286
+K V K+
Sbjct: 492 LKLVPEKD 499
>UniRef50_Q4QGW5 Cluster: Eukaryotic release factor 3, putative;
n=8; Trypanosomatidae|Rep: Eukaryotic release factor 3,
putative - Leishmania major
Length = 763
Score = 46.8 bits (106), Expect = 3e-04
Identities = 20/67 (29%), Positives = 37/67 (55%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
F ++ K+DR+T + E NP +K+ D I + +P+ +E ++F GR R +
Sbjct: 681 FHKLLAKIDRKTNEVVEKNPACVKAGDVVIARIELDRPVVLEPHKDFDKLGRFMLRDDGR 740
Query: 327 TVAVXVI 307
T+A+ V+
Sbjct: 741 TIAIGVV 747
>UniRef50_Q8IIC9 Cluster: Translation elongation factor EF-1,
subunit alpha, putative; n=11; Apicomplexa|Rep:
Translation elongation factor EF-1, subunit alpha,
putative - Plasmodium falciparum (isolate 3D7)
Length = 555
Score = 45.6 bits (103), Expect = 8e-04
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = -3
Query: 513 LXFAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXM 334
+ F E+ E +D+++ K + PK IKS+ + S P+CVE + P GR R
Sbjct: 483 IQFVEMLEVIDKKS-KKKKTKPKFIKSDCIVTAHFLLSNPVCVEVYDNLPQLGRFTLRDQ 541
Query: 333 RQTVAVXVI 307
+T+A+ I
Sbjct: 542 GKTIAIGKI 550
>UniRef50_Q23TC1 Cluster: Elongation factor Tu C-terminal domain
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: Elongation factor Tu C-terminal domain
containing protein - Tetrahymena thermophila SB210
Length = 600
Score = 44.4 bits (100), Expect = 0.002
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = -3
Query: 486 VDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTVAVXVI 307
+D+ G+ T+ NPK I++ + AIV + K C+E F F GR R T+ V I
Sbjct: 537 LDKANGQITKKNPKCIRNNECAIVEVCIEKENCMELFSNFKSFGRVVLREKMNTIGVGSI 596
Query: 306 KAV 298
+
Sbjct: 597 TKI 599
>UniRef50_Q259E7 Cluster: H0801D08.2 protein; n=5; Oryza sativa|Rep:
H0801D08.2 protein - Oryza sativa (Rice)
Length = 654
Score = 44.0 bits (99), Expect = 0.002
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = -3
Query: 501 EIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTV 322
+I ++++TGK+++ P+ + S A++ + K +CVE F GR R T+
Sbjct: 583 KILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLRSQGNTI 642
Query: 321 AVXVIKAV 298
AV ++ V
Sbjct: 643 AVGIVSRV 650
>UniRef50_UPI0000499ED8 Cluster: guanine nucleotide regulatory
protein; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
guanine nucleotide regulatory protein - Entamoeba
histolytica HM-1:IMSS
Length = 488
Score = 42.7 bits (96), Expect = 0.005
Identities = 20/61 (32%), Positives = 35/61 (57%)
Frame = -3
Query: 501 EIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTV 322
+I ++ DR +GK + NP ++S V + +KP+C+E ++ FP GR R +T+
Sbjct: 418 KITDQFDR-SGKLAKKNPPFLRSGSVGNVVIKTAKPICIEPYELFPQLGRFTLRDAGKTI 476
Query: 321 A 319
A
Sbjct: 477 A 477
>UniRef50_Q9LM39 Cluster: T10O22.4; n=7; Magnoliophyta|Rep: T10O22.4
- Arabidopsis thaliana (Mouse-ear cress)
Length = 615
Score = 42.3 bits (95), Expect = 0.007
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = -3
Query: 501 EIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTV 322
E+K ++D +T K + +K+ A + + + +C+E F +FP GR R +T+
Sbjct: 541 ELKSQIDLKTRKPMKKKVLFVKNGAAVVCRIQVTNSICIEKFSDFPQLGRFTLRTEGKTI 600
Query: 321 AV 316
AV
Sbjct: 601 AV 602
>UniRef50_A2WJZ4 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (indica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. indica
(Rice)
Length = 806
Score = 42.3 bits (95), Expect = 0.007
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = -3
Query: 477 RTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTVAVXVIKAV 298
+ GK ++ P+ +KS+ A+V + P+CVE F + GR R T+AV V+ V
Sbjct: 741 KAGKPSKTAPRFLKSKQNAVVQVTLDAPVCVEEFSKCRALGRAFLRSCGSTIAVGVVTRV 800
>UniRef50_Q86NR4 Cluster: RE29053p; n=5; Diptera|Rep: RE29053p -
Drosophila melanogaster (Fruit fly)
Length = 670
Score = 42.3 bits (95), Expect = 0.007
Identities = 16/68 (23%), Positives = 35/68 (51%)
Frame = -3
Query: 501 EIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTV 322
++ + + TG+ + P+ + + A+V L S+P+C+E + +F GR R T+
Sbjct: 602 KLTASIHKSTGEVVKKKPRCLGNNSCALVELETSRPICIERYADFKELGRVMLRVAGVTI 661
Query: 321 AVXVIKAV 298
A ++ +
Sbjct: 662 AAGMVTKI 669
>UniRef50_Q9HGI4 Cluster: Eukaryotic peptide chain release factor
GTP-binding subunit; n=2; Zygosaccharomyces rouxii|Rep:
Eukaryotic peptide chain release factor GTP-binding
subunit - Zygosaccharomyces rouxii (Candida mogii)
Length = 662
Score = 41.9 bits (94), Expect = 0.009
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = -3
Query: 501 EIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTV 322
++ K++R T + ++ P K I L +P+CVE++Q++P GR R T+
Sbjct: 593 KLLHKLERGTNRKSKKPPAFAKKGMKIIAVLETERPVCVETYQDYPQLGRFTLRDQGTTI 652
Query: 321 AVXVI 307
A+ I
Sbjct: 653 AIGKI 657
>UniRef50_P50257 Cluster: Elongation factor 1-alpha S; n=1; Porphyra
purpurea|Rep: Elongation factor 1-alpha S - Porphyra
purpurea
Length = 515
Score = 41.5 bits (93), Expect = 0.012
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = -3
Query: 438 KSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTVAVXVIKAV 298
K+ ++ V L P+K + VE++ + P GR A R M++TVAV VI+ V
Sbjct: 428 KTGESVNVWLQPTKAMVVEAYSMYSPLGRFAVRDMKKTVAVGVIQCV 474
>UniRef50_O45622 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 532
Score = 39.9 bits (89), Expect = 0.038
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = -3
Query: 486 VDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTVAV-XV 310
+D++TG+ K +K ++ I+ L +P +E F+E+P GR R +T+A+ V
Sbjct: 470 IDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKV 527
Query: 309 IKAV 298
+K V
Sbjct: 528 LKVV 531
>UniRef50_A7RM15 Cluster: Predicted protein; n=3; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 473
Score = 39.9 bits (89), Expect = 0.038
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = -3
Query: 486 VDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTVAVXVI 307
+++ TG+ + P+ + A V L S+P+CVE ++++ GR R T+A VI
Sbjct: 411 LNKSTGEVIQRKPRCLPKNSNAEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 470
Query: 306 KAV 298
V
Sbjct: 471 TQV 473
>UniRef50_Q07089 Cluster: SUP35 protein; n=3; Saccharomyces
cerevisiae|Rep: SUP35 protein - Saccharomyces cerevisiae
(Baker's yeast)
Length = 224
Score = 39.9 bits (89), Expect = 0.038
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = -3
Query: 501 EIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTV 322
++ K+++ T + ++ P K I L P+CVE++Q++P GR R T+
Sbjct: 155 KLLHKLEKGTNRKSKKPPAFAKKGMKVIAVLETEAPVCVETYQDYPQLGRFTLRDQGTTI 214
Query: 321 AVXVI 307
A+ I
Sbjct: 215 AIGKI 219
>UniRef50_P05453 Cluster: Eukaryotic peptide chain release factor
GTP-binding subunit; n=50; Ascomycota|Rep: Eukaryotic
peptide chain release factor GTP-binding subunit -
Saccharomyces cerevisiae (Baker's yeast)
Length = 685
Score = 39.9 bits (89), Expect = 0.038
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = -3
Query: 501 EIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTV 322
++ K+++ T + ++ P K I L P+CVE++Q++P GR R T+
Sbjct: 616 KLLHKLEKGTNRKSKKPPAFAKKGMKVIAVLETEAPVCVETYQDYPQLGRFTLRDQGTTI 675
Query: 321 AVXVI 307
A+ I
Sbjct: 676 AIGKI 680
>UniRef50_A7P6A6 Cluster: Chromosome chr9 scaffold_7, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr9 scaffold_7, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 154
Score = 39.5 bits (88), Expect = 0.050
Identities = 32/70 (45%), Positives = 34/70 (48%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
FAEI K+DRR GK E P + L PS PP GR A R MRQ
Sbjct: 90 FAEILTKIDRRPGKELEKEP------NPWWWRLSPS-----------PPLGRFAVRDMRQ 132
Query: 327 TVAVXVIKAV 298
TVAV VIK V
Sbjct: 133 TVAVGVIKNV 142
>UniRef50_A0BK03 Cluster: Chromosome undetermined scaffold_111,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_111,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 446
Score = 39.1 bits (87), Expect = 0.066
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = -3
Query: 501 EIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTV 322
+I +K NP+ +K+ D +V P K + +E+ ++P G+ A R +
Sbjct: 363 QISQKTSLNDQNQNIENPQDLKAGDVGVVEFKPIKQITLENHFDYPQLGKIAIVDNRHMI 422
Query: 321 AVXVIKAVNFKE 286
A VI V KE
Sbjct: 423 AYGVILEVKKKE 434
>UniRef50_O13354 Cluster: Eukaryotic peptide chain release factor
GTP-binding subunit; n=31; cellular organisms|Rep:
Eukaryotic peptide chain release factor GTP-binding
subunit - Candida albicans (Yeast)
Length = 715
Score = 39.1 bits (87), Expect = 0.066
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
F E+K K+++ T + ++ P K I L + +C E+++++P GR R
Sbjct: 645 FIELKHKLEKGTNRKSKKPPAFAKKGMKIIAILEVGELVCAETYKDYPQLGRFTLRDQGT 704
Query: 327 TVAVXVI 307
T+A+ I
Sbjct: 705 TIAIGKI 711
>UniRef50_Q9Y450 Cluster: HBS1-like protein; n=43; Euteleostomi|Rep:
HBS1-like protein - Homo sapiens (Human)
Length = 684
Score = 38.7 bits (86), Expect = 0.088
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = -3
Query: 486 VDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTVAVXVI 307
+++ TG+ T+ PK + A+V L +P+ +E +++F GR R T+A V+
Sbjct: 620 LNKSTGEVTKKKPKFLTKGQNALVELQTQRPIALELYKDFKELGRFMLRYGGSTIAAGVV 679
Query: 306 KAV 298
+
Sbjct: 680 TEI 682
>UniRef50_A4ZCD1 Cluster: GTP-binding protein; n=9;
Magnoliophyta|Rep: GTP-binding protein - Triticum
aestivum (Wheat)
Length = 533
Score = 37.5 bits (83), Expect = 0.20
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -3
Query: 495 KEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTVAV 316
K KV K T+ P +K+ + + + +C+E F +FP GR R +T+AV
Sbjct: 458 KAKVTDPKKKKTKRKPLFVKNGAVVVCRVQVTNLICIEKFSDFPQLGRFTLRTEGKTIAV 517
>UniRef50_Q6JIY6 Cluster: Translation elongation factor 1 alpha;
n=3; Microsporidia|Rep: Translation elongation factor 1
alpha - Antonospora locustae (Nosema locustae)
Length = 478
Score = 36.7 bits (81), Expect = 0.35
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = -3
Query: 504 AEIKEKVDRRTGKSTEVNPK--SIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMR 331
A+I + ++++ K E + SI+++D A+ + P KP+ +E ++FP R A R
Sbjct: 373 AKIAKFINKKGPKDKEPVTEFDSIQNKDNALCVIVPQKPIVMEVLKDFPSLSRFALRDGG 432
Query: 330 QTVAVXVIKAVNFKE 286
+ VA+ I V KE
Sbjct: 433 KIVAIGSIVEVLTKE 447
>UniRef50_UPI0000D55B6A Cluster: PREDICTED: similar to CG1898-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG1898-PA - Tribolium castaneum
Length = 792
Score = 36.3 bits (80), Expect = 0.47
Identities = 16/69 (23%), Positives = 38/69 (55%)
Frame = -3
Query: 504 AEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQT 325
+++ +++R TG+ + +P+ + + +AIV + S+P+ +E + + GR R T
Sbjct: 722 SKLISQLNRSTGEVVKKHPRFLSNNTSAIVEIQVSRPIALELYSDCKELGRFMLRVGGVT 781
Query: 324 VAVXVIKAV 298
+A +I +
Sbjct: 782 IAAGLITKI 790
>UniRef50_Q9NCN7 Cluster: Eukaryotic release factor 3 GTPase
subunit; n=2; Trichomonas vaginalis|Rep: Eukaryotic
release factor 3 GTPase subunit - Trichomonas vaginalis
Length = 587
Score = 35.5 bits (78), Expect = 0.82
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = -3
Query: 471 GKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTVAVXVI 307
G+ E NP+ IK A V L P+CVE ++FP GR R T V ++
Sbjct: 524 GRELEKNPRFIKRGCLAEVILKFDHPICVEVAKDFPQLGRFIIRKEGFTTIVGLV 578
>UniRef50_O74718 Cluster: Eukaryotic peptide chain release factor
GTP-binding subunit; n=2; Schizosaccharomyces pombe|Rep:
Eukaryotic peptide chain release factor GTP-binding
subunit - Schizosaccharomyces pombe (Fission yeast)
Length = 662
Score = 35.1 bits (77), Expect = 1.1
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
FA++ K+D+ T + ++ P I L P+C+E F+++ GR R
Sbjct: 592 FAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGT 650
Query: 327 TVAV-XVIKAVN 295
TVAV V+K ++
Sbjct: 651 TVAVGKVVKILD 662
>UniRef50_Q96WS7 Cluster: Eukaryotic release factor 3; n=1;
Pneumocystis carinii|Rep: Eukaryotic release factor 3 -
Pneumocystis carinii
Length = 629
Score = 33.5 bits (73), Expect = 3.3
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
F ++ K+D+ T + ++ P + L + PLC+E+F ++ GR R
Sbjct: 556 FLKLLYKLDKLTNRRSKKPPAFATKGMKIVALLEVASPLCLETFDKYKQLGRFILRNEGL 615
Query: 327 TVAV 316
TVA+
Sbjct: 616 TVAI 619
>UniRef50_Q5KFJ4 Cluster: Translation release factor, putative; n=3;
Eukaryota|Rep: Translation release factor, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 757
Score = 33.1 bits (72), Expect = 4.4
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = -3
Query: 483 DRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTVAV 316
+++T + ++ P+ K+ + S P+C+E F+++ GR R +TVA+
Sbjct: 677 EKKTRRKSKKPPQFAKAGMLVSALIETSAPICIERFEDYKMLGRFTLRDEGKTVAI 732
>UniRef50_Q9NCN5 Cluster: Eukaryotic release factor 3 GTPase
subunit; n=2; Euplotes|Rep: Eukaryotic release factor 3
GTPase subunit - Euplotes aediculatus
Length = 805
Score = 32.7 bits (71), Expect = 5.8
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = -3
Query: 453 NPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTVAVXVIKAVNFKEAGGX 274
NPK KS IV + P+C+E ++ GR R +T+A+ K + +K
Sbjct: 685 NPKYCKSGSKVIVKISTRVPVCLEKYEFIEHMGRFTLRDEGRTIALG--KVLRYKPTVVK 742
Query: 273 KV 268
KV
Sbjct: 743 KV 744
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 420,354,836
Number of Sequences: 1657284
Number of extensions: 6186759
Number of successful extensions: 12268
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 12030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12265
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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