Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0117.Seq
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 99 2e-22
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 99 2e-22
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 99 2e-22
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 35 0.007
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 7.3
SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.3
SPBC660.09 |mug168||sequence orphan|Schizosaccharomyces pombe|ch... 25 9.7
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 25 9.7
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 99 bits (238), Expect = 2e-22
Identities = 48/82 (58%), Positives = 58/82 (70%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
FAE+ EK+DRR+GK E +PK +KS DA I + PSKP+CVE+F ++ P GR A R MRQ
Sbjct: 370 FAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQ 429
Query: 327 TVAVXVIKAVNFKEAGGXKVTK 262
TVAV VIKAV G KVTK
Sbjct: 430 TVAVGVIKAVEKVAPGAAKVTK 451
Score = 27.5 bits (58), Expect = 1.4
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -1
Query: 548 TPVLDCHXAHIA 513
+PVLDCH AHIA
Sbjct: 356 SPVLDCHTAHIA 367
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 99 bits (238), Expect = 2e-22
Identities = 48/82 (58%), Positives = 58/82 (70%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
FAE+ EK+DRR+GK E +PK +KS DA I + PSKP+CVE+F ++ P GR A R MRQ
Sbjct: 370 FAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQ 429
Query: 327 TVAVXVIKAVNFKEAGGXKVTK 262
TVAV VIKAV G KVTK
Sbjct: 430 TVAVGVIKAVEKVAPGAAKVTK 451
Score = 27.5 bits (58), Expect = 1.4
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -1
Query: 548 TPVLDCHXAHIA 513
+PVLDCH AHIA
Sbjct: 356 SPVLDCHTAHIA 367
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 99 bits (238), Expect = 2e-22
Identities = 48/82 (58%), Positives = 58/82 (70%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
FAE+ EK+DRR+GK E +PK +KS DA I + PSKP+CVE+F ++ P GR A R MRQ
Sbjct: 370 FAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAPLGRFAVRDMRQ 429
Query: 327 TVAVXVIKAVNFKEAGGXKVTK 262
TVAV VIKAV G KVTK
Sbjct: 430 TVAVGVIKAVEKVAPGAAKVTK 451
Score = 27.5 bits (58), Expect = 1.4
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -1
Query: 548 TPVLDCHXAHIA 513
+PVLDCH AHIA
Sbjct: 356 SPVLDCHTAHIA 367
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 35.1 bits (77), Expect = 0.007
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
FA++ K+D+ T + ++ P I L P+C+E F+++ GR R
Sbjct: 592 FAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGT 650
Query: 327 TVAV-XVIKAVN 295
TVAV V+K ++
Sbjct: 651 TVAVGKVVKILD 662
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 427 IFRLDGFWVDFSRFTSXTVNFFFDF 501
I+RL+ FW S+ S T N F +F
Sbjct: 1133 IYRLEIFWSFVSKDLSNTTNDFLEF 1157
>SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 143
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 495 KEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPL 391
+EKV +RT S +N + ++ D ++NL + L
Sbjct: 39 EEKVTQRTASSDSLNTIASENNDENVINLEEFRQL 73
>SPBC660.09 |mug168||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 115
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 489 KVDRRTGKSTEVNPKSIKSEDAAI 418
KVD++ G +T V+P K+E+ +
Sbjct: 72 KVDKKFGSATSVSPVHTKAEEPGL 95
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 158 KRATNSFXXYIFXKACNVTLFY 93
K A++SF IF K C TL++
Sbjct: 59 KYASSSFAERIFCKNCGTTLYF 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,770,234
Number of Sequences: 5004
Number of extensions: 26655
Number of successful extensions: 53
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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