Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0117.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 97 1e-20
03_01_0547 + 4093196-4093657,4094267-4095148 97 1e-20
03_01_0544 + 4082528-4082989,4083585-4084466 97 1e-20
03_01_0543 + 4076981-4077442,4078145-4079026 97 1e-20
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 44 8e-05
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 40 0.001
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 40 0.001
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 29 1.8
09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959 27 7.5
04_04_1677 + 35306232-35306328,35306697-35307248,35307324-353076... 27 7.5
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 96.7 bits (230), Expect = 1e-20
Identities = 46/82 (56%), Positives = 58/82 (70%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
FAE+ K+DRR+GK E PK +K+ DA +V + P+KP+ VE+F E+PP GR A R MRQ
Sbjct: 360 FAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQ 419
Query: 327 TVAVXVIKAVNFKEAGGXKVTK 262
TVAV VIK V K+ G KVTK
Sbjct: 420 TVAVGVIKNVEKKDPTGAKVTK 441
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 96.7 bits (230), Expect = 1e-20
Identities = 46/82 (56%), Positives = 58/82 (70%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
FAE+ K+DRR+GK E PK +K+ DA +V + P+KP+ VE+F E+PP GR A R MRQ
Sbjct: 360 FAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQ 419
Query: 327 TVAVXVIKAVNFKEAGGXKVTK 262
TVAV VIK V K+ G KVTK
Sbjct: 420 TVAVGVIKNVEKKDPTGAKVTK 441
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 96.7 bits (230), Expect = 1e-20
Identities = 46/82 (56%), Positives = 58/82 (70%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
FAE+ K+DRR+GK E PK +K+ DA +V + P+KP+ VE+F E+PP GR A R MRQ
Sbjct: 360 FAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQ 419
Query: 327 TVAVXVIKAVNFKEAGGXKVTK 262
TVAV VIK V K+ G KVTK
Sbjct: 420 TVAVGVIKNVEKKDPTGAKVTK 441
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 96.7 bits (230), Expect = 1e-20
Identities = 46/82 (56%), Positives = 58/82 (70%)
Frame = -3
Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
FAE+ K+DRR+GK E PK +K+ DA +V + P+KP+ VE+F E+PP GR A R MRQ
Sbjct: 360 FAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQ 419
Query: 327 TVAVXVIKAVNFKEAGGXKVTK 262
TVAV VIK V K+ G KVTK
Sbjct: 420 TVAVGVIKNVEKKDPTGAKVTK 441
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 44.0 bits (99), Expect = 8e-05
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = -3
Query: 501 EIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTV 322
+I ++++TGK+++ P+ + S A++ + K +CVE F GR R T+
Sbjct: 583 KILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLRSQGNTI 642
Query: 321 AVXVIKAV 298
AV ++ V
Sbjct: 643 AVGIVSRV 650
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = -3
Query: 477 RTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTVAVXVI 307
+ GK ++ P+ +KS+ A+V + P+CV+ F + GR R T+AV V+
Sbjct: 615 KAGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = -3
Query: 477 RTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTVAVXVI 307
+ GK ++ P+ +KS+ A+V + P+CV+ F + GR R T+AV V+
Sbjct: 615 KAGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = -3
Query: 495 KEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXR 340
K++ D + K + P +K+ + + + +C+E+F +FP GR R
Sbjct: 365 KKEADPKK-KKPKRKPLFVKNGAVVVCRIQVNNLICIENFSDFPQLGRFTLR 415
>09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959
Length = 708
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +2
Query: 425 ASSDLMDFGLTSVDLPVRRSTFSL 496
A+ DLM G++ V+LPVRR+ F++
Sbjct: 580 ATLDLMYSGISMVNLPVRRNHFAV 603
>04_04_1677 +
35306232-35306328,35306697-35307248,35307324-35307608,
35308035-35308296,35308378-35308430,35308520-35308587,
35310331-35310420,35310502-35310586,35310822-35311254,
35312872-35313439,35313527-35314000
Length = 988
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -1
Query: 443 PSSLKMQPLSTWXLPSLYV*SPSRNSH 363
PSS P S P YV SPSR+SH
Sbjct: 687 PSSPPRSPTSRGGRPVYYVQSPSRDSH 713
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,570,682
Number of Sequences: 37544
Number of extensions: 177777
Number of successful extensions: 310
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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