Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0117.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                106   1e-23
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           43   2e-04
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)            32   0.36 

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  106 bits (254), Expect = 1e-23
 Identities = 50/82 (60%), Positives = 62/82 (75%)
 Frame = -3

Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
           F ++ EK+DRR+GK  E NPK IK+ DAA+V + PSKP+CVE+F EFPP GR A R M+Q
Sbjct: 231 FDKLLEKIDRRSGKKLEDNPKMIKTGDAAMVEMIPSKPMCVETFTEFPPLGRFAVRDMKQ 290

Query: 327 TVAVXVIKAVNFKEAGGXKVTK 262
           TVAV VIK+V+  EA G K TK
Sbjct: 291 TVAVGVIKSVDKTEAAGGKTTK 312



 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -1

Query: 548 TPVLDCHXAHIA 513
           +PVLDCH AHIA
Sbjct: 217 SPVLDCHTAHIA 228


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -3

Query: 486 VDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXR 340
           +D++TGK  +  P+ IK +  AI  L     +C+E F +F   GR   R
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLR 544


>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
          Length = 80

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 423 AIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTVAVXVI 307
           A V L  S+P+CVE ++++   GR   R    T+A  VI
Sbjct: 40  AEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,284,111
Number of Sequences: 59808
Number of extensions: 203181
Number of successful extensions: 394
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)