Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0117.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation fact...   103   8e-23
U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation fact...   103   8e-23
U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation fact...   103   8e-23
Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical pr...    40   0.001
Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical pr...    31   0.55 
Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical pr...    31   0.55 

>U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation factor
           protein 4, isoformd protein.
          Length = 429

 Score =  103 bits (247), Expect = 8e-23
 Identities = 51/86 (59%), Positives = 60/86 (69%)
 Frame = -3

Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
           F E+KEKVDRRTGK  E  PK +KS DA IV L P+KPLCVESF ++ P GR A R MRQ
Sbjct: 338 FNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQ 397

Query: 327 TVAVXVIKAVNFKEAGGXKVTKXXER 250
           TVAV VIK+V   +    KVTK  ++
Sbjct: 398 TVAVGVIKSVEKSDGSSGKVTKSAQK 423



 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -1

Query: 548 TPVLDCHXAHIA 513
           TPVLDCH AHIA
Sbjct: 324 TPVLDCHTAHIA 335


>U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation factor
           protein 4, isoforma protein.
          Length = 463

 Score =  103 bits (247), Expect = 8e-23
 Identities = 51/86 (59%), Positives = 60/86 (69%)
 Frame = -3

Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
           F E+KEKVDRRTGK  E  PK +KS DA IV L P+KPLCVESF ++ P GR A R MRQ
Sbjct: 372 FNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQ 431

Query: 327 TVAVXVIKAVNFKEAGGXKVTKXXER 250
           TVAV VIK+V   +    KVTK  ++
Sbjct: 432 TVAVGVIKSVEKSDGSSGKVTKSAQK 457



 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -1

Query: 548 TPVLDCHXAHIA 513
           TPVLDCH AHIA
Sbjct: 358 TPVLDCHTAHIA 369


>U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation factor
           protein 3 protein.
          Length = 463

 Score =  103 bits (247), Expect = 8e-23
 Identities = 51/86 (59%), Positives = 60/86 (69%)
 Frame = -3

Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
           F E+KEKVDRRTGK  E  PK +KS DA IV L P+KPLCVESF ++ P GR A R MRQ
Sbjct: 372 FNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQ 431

Query: 327 TVAVXVIKAVNFKEAGGXKVTKXXER 250
           TVAV VIK+V   +    KVTK  ++
Sbjct: 432 TVAVGVIKSVEKSDGSSGKVTKSAQK 457



 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -1

Query: 548 TPVLDCHXAHIA 513
           TPVLDCH AHIA
Sbjct: 358 TPVLDCHTAHIA 369


>Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical
           protein H19N07.1 protein.
          Length = 532

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = -3

Query: 486 VDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTVAV-XV 310
           +D++TG+      K +K ++  I+ L   +P  +E F+E+P  GR   R   +T+A+  V
Sbjct: 470 IDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKV 527

Query: 309 IKAV 298
           +K V
Sbjct: 528 LKVV 531


>Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical
           protein K07A12.4b protein.
          Length = 592

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 16/76 (21%), Positives = 33/76 (43%)
 Frame = -3

Query: 525 CPHCLXFAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXA 346
           C  C  F  +   +++  G+  +  P+ I    +A+V +     + +E+F      GR  
Sbjct: 514 CVPCT-FTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVT 572

Query: 345 XRXMRQTVAVXVIKAV 298
            R    T+A  +++ V
Sbjct: 573 FRAGGNTIAAGIVEKV 588


>Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical
           protein K07A12.4a protein.
          Length = 610

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 16/76 (21%), Positives = 33/76 (43%)
 Frame = -3

Query: 525 CPHCLXFAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXA 346
           C  C  F  +   +++  G+  +  P+ I    +A+V +     + +E+F      GR  
Sbjct: 532 CVPCT-FTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVT 590

Query: 345 XRXMRQTVAVXVIKAV 298
            R    T+A  +++ V
Sbjct: 591 FRAGGNTIAAGIVEKV 606


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,911,437
Number of Sequences: 27780
Number of extensions: 156313
Number of successful extensions: 284
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)