Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0117.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   125   3e-31
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   125   3e-31
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    62   5e-12
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   8.2  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   8.2  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   8.2  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  125 bits (302), Expect = 3e-31
 Identities = 63/86 (73%), Positives = 70/86 (81%)
 Frame = -3

Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
           FAEIKEK DRRTGK+TE NPKSIKS DAAIV L P+KP+CVE+FQEFPP GR A R MRQ
Sbjct: 372 FAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQ 431

Query: 327 TVAVXVIKAVNFKEAGGXKVTKXXER 250
           TVAV VIK+V FK+  G KVTK  E+
Sbjct: 432 TVAVGVIKSVTFKDTQG-KVTKAAEK 456



 Score = 29.1 bits (62), Expect = 0.031
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -1

Query: 548 TPVLDCHXAHIA 513
           TPVLDCH AHIA
Sbjct: 358 TPVLDCHTAHIA 369


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  125 bits (302), Expect = 3e-31
 Identities = 63/86 (73%), Positives = 69/86 (80%)
 Frame = -3

Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
           FA+IKEK DRR GK+TE NPKSIKS DAAIV L PSKP+C E+FQEFPP GR A R MRQ
Sbjct: 372 FADIKEKCDRRNGKTTEENPKSIKSGDAAIVMLVPSKPMCAEAFQEFPPLGRFAVRDMRQ 431

Query: 327 TVAVXVIKAVNFKEAGGXKVTKXXER 250
           TVAV VIKAV FK+A G KVTK  E+
Sbjct: 432 TVAVGVIKAVTFKDAAG-KVTKAAEK 456



 Score = 29.1 bits (62), Expect = 0.031
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -1

Query: 548 TPVLDCHXAHIA 513
           TPVLDCH AHIA
Sbjct: 358 TPVLDCHTAHIA 369


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 61.7 bits (143), Expect = 5e-12
 Identities = 30/37 (81%), Positives = 32/37 (86%)
 Frame = -3

Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSK 397
           FAEIKEK DRRTGK+TE NPKSIKS DAAIV L P+K
Sbjct: 83  FAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTK 119



 Score = 29.1 bits (62), Expect = 0.031
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -1

Query: 548 TPVLDCHXAHIA 513
           TPVLDCH AHIA
Sbjct: 69  TPVLDCHTAHIA 80


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 186 KYASCMKNCAVNSSSYXLPLVAF 254
           K+  C+KN A   SSY +  + F
Sbjct: 94  KFYDCLKNSADTISSYFVGKMYF 116


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 186 KYASCMKNCAVNSSSYXLPLVAF 254
           K+  C+KN A   SSY +  + F
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYF 121


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 186 KYASCMKNCAVNSSSYXLPLVAF 254
           K+  C+KN A   SSY +  + F
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYF 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,377
Number of Sequences: 438
Number of extensions: 1778
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)