Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0117.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ...    98   4e-21
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ...    98   4e-21
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ...    98   4e-21
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ...    98   4e-21
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-...    86   1e-17
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,...    42   2e-04
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E...    42   3e-04
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote...    28   3.6  
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ...    27   8.3  

>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
           identical to SWISS-PROT:P13905 elongation factor 1-alpha
           (EF-1-alpha) [Arabidopsis thaliana]
          Length = 449

 Score = 97.9 bits (233), Expect = 4e-21
 Identities = 46/82 (56%), Positives = 60/82 (73%)
 Frame = -3

Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
           F+EI  K+DRR+GK  E  PK +K+ DA +V + P+KP+ VE+F E+PP GR A R MRQ
Sbjct: 360 FSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQ 419

Query: 327 TVAVXVIKAVNFKEAGGXKVTK 262
           TVAV VIK+V+ K+  G KVTK
Sbjct: 420 TVAVGVIKSVDKKDPTGAKVTK 441


>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 97.9 bits (233), Expect = 4e-21
 Identities = 46/82 (56%), Positives = 60/82 (73%)
 Frame = -3

Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
           F+EI  K+DRR+GK  E  PK +K+ DA +V + P+KP+ VE+F E+PP GR A R MRQ
Sbjct: 360 FSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQ 419

Query: 327 TVAVXVIKAVNFKEAGGXKVTK 262
           TVAV VIK+V+ K+  G KVTK
Sbjct: 420 TVAVGVIKSVDKKDPTGAKVTK 441


>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 97.9 bits (233), Expect = 4e-21
 Identities = 46/82 (56%), Positives = 60/82 (73%)
 Frame = -3

Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
           F+EI  K+DRR+GK  E  PK +K+ DA +V + P+KP+ VE+F E+PP GR A R MRQ
Sbjct: 360 FSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQ 419

Query: 327 TVAVXVIKAVNFKEAGGXKVTK 262
           TVAV VIK+V+ K+  G KVTK
Sbjct: 420 TVAVGVIKSVDKKDPTGAKVTK 441


>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 97.9 bits (233), Expect = 4e-21
 Identities = 46/82 (56%), Positives = 60/82 (73%)
 Frame = -3

Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
           F+EI  K+DRR+GK  E  PK +K+ DA +V + P+KP+ VE+F E+PP GR A R MRQ
Sbjct: 360 FSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQ 419

Query: 327 TVAVXVIKAVNFKEAGGXKVTK 262
           TVAV VIK+V+ K+  G KVTK
Sbjct: 420 TVAVGVIKSVDKKDPTGAKVTK 441


>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
           domain-containing protein similar to SP|P13905
           Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
           thaliana}; contains Pfam profile PF03143: Elongation
           factor Tu C-terminal domain
          Length = 104

 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 40/79 (50%), Positives = 54/79 (68%)
 Frame = -3

Query: 507 FAEIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQ 328
           F+EI  K+D RTG   E  PK +K+ +AAI+N+ P+KP+ VE++  +PP GR A R MRQ
Sbjct: 26  FSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTPTKPMVVEAYSAYPPLGRFAIRDMRQ 85

Query: 327 TVAVXVIKAVNFKEAGGXK 271
           TV V VIK+V  K+  G K
Sbjct: 86  TVGVGVIKSVVKKDPSGAK 104



 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -1

Query: 548 TPVLDCHXAHIA 513
           TPVLDCH +HIA
Sbjct: 12  TPVLDCHTSHIA 23


>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
           putative similar to EF-1-alpha-related GTP-binding
           protein gi|1009232|gb|AAA79032
          Length = 532

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = -3

Query: 501 EIKEKVDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTV 322
           E+K ++D +T K  +     +K+  A +  +  +  +C+E F +FP  GR   R   +T+
Sbjct: 458 ELKSQIDLKTRKPMKKKVLFVKNGAAVVCRIQVTNSICIEKFSDFPQLGRFTLRTEGKTI 517

Query: 321 AV 316
           AV
Sbjct: 518 AV 519


>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
           EF-1-alpha, putative contains similarity to
           SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
           [Aeropyrum pernix]
          Length = 667

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 18/63 (28%), Positives = 37/63 (58%)
 Frame = -3

Query: 486 VDRRTGKSTEVNPKSIKSEDAAIVNLXPSKPLCVESFQEFPPXGRXAXRXMRQTVAVXVI 307
           +D +TG+ T+ +P+ + ++ +A++ +    P+CVE+F E    GR   R   +TVA+  +
Sbjct: 601 LDPKTGQPTKKSPRCLTAKQSAMLEVSLQNPVCVETFSESRALGRVFLRSSGRTVAMGKV 660

Query: 306 KAV 298
             +
Sbjct: 661 TRI 663


>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
           similar to cell death suppressor protein lls1 from Zea
           mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
           Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
           [2Fe-2S] domain
          Length = 536

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 513 LXFAEIKEKVDRRTGKSTEVNPKSIKSE 430
           + F + KEK+DR  GK  E+N K + ++
Sbjct: 257 MRFPKPKEKIDREGGKPLEINVKKLDNK 284


>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 725

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
 Frame = -1

Query: 128 IFXKACN---VTLFYXLYXVIHNI--SXTFCYDCKLKC 30
           I+ K C+   V LFY    +  N   S  FCY C+L+C
Sbjct: 619 IYLKPCHIFKVGLFYKEVEIARNDGNSRLFCYICRLRC 656


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,344,576
Number of Sequences: 28952
Number of extensions: 143928
Number of successful extensions: 322
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)