Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0116.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    62   8e-11
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   8.4  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    25   8.4  

>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 61.7 bits (143), Expect = 8e-11
 Identities = 29/78 (37%), Positives = 47/78 (60%)
 Frame = -2

Query: 597 AQVLFDEAA*VQ*RHAGDCVTARQGCCDFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVY 418
           A+ LFD+A   +         A +   +FL W SEPELD R++M  + I + ++L A+  
Sbjct: 226 ARPLFDDAVEFEDGTPATTAQAAKDVVNFLHWASEPELDIRKKMGFQVITVLTILTALSM 285

Query: 417 YYKRHKWSTLKSRKLAYK 364
           +YKR KW+ +K+RK+ Y+
Sbjct: 286 WYKRFKWTPIKNRKIFYQ 303


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 51  HGKSQAQLPTDHLTLQFDCATASQWQNAINII 146
           H   +A L  DHL ++ D   AS++ NAI+ I
Sbjct: 270 HKLQKAFLSPDHLIVEEDFYNASKYLNAISDI 301


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 301 NLSKTFVLLLVSCWRLFLRNGLVGELS 381
           +L K     ++SCWR++L  G++  ++
Sbjct: 696 SLMKYLTSAVISCWRIYLLIGILAAIT 722


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,611
Number of Sequences: 5004
Number of extensions: 46683
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)