Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0116.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0389 - 13409848-13409964,13410049-13410114,13410209-134103... 54 9e-08
01_07_0097 + 41070877-41070942,41071039-41071104,41071189-41071305 53 2e-07
03_05_0322 - 23094767-23094873,23094956-23095199,23095288-23095479 32 0.40
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 29 2.1
10_08_0415 - 17761594-17762382 28 4.9
05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625 28 4.9
10_08_0975 - 21978642-21979520 28 6.5
02_04_0613 + 24392238-24393550,24394585-24394687,24395153-24395257 27 8.6
>05_03_0389 -
13409848-13409964,13410049-13410114,13410209-13410325,
13410822-13410893,13410979-13411258,13411528-13411730,
13412230-13412316,13412705-13412758,13413042-13413221,
13414402-13414576,13414628-13414918,13414923-13415344
Length = 687
Score = 54.0 bits (124), Expect = 9e-08
Identities = 23/53 (43%), Positives = 34/53 (64%)
Frame = -2
Query: 513 FLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKPVS 355
FL W +EPE+++R+ M +K I + S+ YY+R +WS LKSRKL V+
Sbjct: 635 FLSWAAEPEMEERKLMGVKWIFLLSLALLQAAYYRRMRWSVLKSRKLVLDVVN 687
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -3
Query: 593 KFYLTKQLEYSDGTPATASQLAKDVATF*NGAQNP 489
K + +EY DGTPAT +Q+ KDV +F + A P
Sbjct: 608 KMLIDGAVEYEDGTPATEAQMGKDVVSFLSWAAEP 642
>01_07_0097 + 41070877-41070942,41071039-41071104,41071189-41071305
Length = 82
Score = 53.2 bits (122), Expect = 2e-07
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = -2
Query: 513 FLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKPVS 355
FL W +EPE+++R+ M +K I + S+ YY+R KWS KSRKL V+
Sbjct: 30 FLSWAAEPEMEERKLMGVKWIFLLSLALLQAAYYRRMKWSVYKSRKLVLDVVN 82
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -3
Query: 593 KFYLTKQLEYSDGTPATASQLAKDVATF*NGAQNP 489
K + +EY DGTPAT +Q+ KDV +F + A P
Sbjct: 3 KMLIDGAVEYEDGTPATEAQMGKDVVSFLSWAAEP 37
>03_05_0322 - 23094767-23094873,23094956-23095199,23095288-23095479
Length = 180
Score = 31.9 bits (69), Expect = 0.40
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 543 CVTARQGCCDFLKWCSEP 490
CV AR GCCD+ W P
Sbjct: 60 CVNARSGCCDYFAWVDGP 77
>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -2
Query: 558 RHAGDCVT--ARQGCCDFLKWCSEPELDDRRQMTIKAIG 448
RHAG V+ R CD LK + + DD R KAIG
Sbjct: 2343 RHAGKSVSPVVRSRGCDLLKDLLQADADDVRSSAAKAIG 2381
>10_08_0415 - 17761594-17762382
Length = 262
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 560 DGTPATASQLAKDVATF*NGAQNPNWTTVGR*PSKLSA 447
DG+ + S LA+ VA + G P W +G PS+L+A
Sbjct: 42 DGSDISTSDLARVVARWGVGRGRPTWALMGS-PSQLAA 78
>05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625
Length = 768
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 364 LVGELSRLERGPLVPLVVVDNGGKHGEHADSFDGH 468
+ E +R + P V VVV+ G GE AD GH
Sbjct: 15 IADEAARRDGSPPVDAVVVEGAGTSGEDADWPSGH 49
>10_08_0975 - 21978642-21979520
Length = 292
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 479 SSSSGSEHHFRKSQHPWRAVTQSPACRHCTQAASS 583
SSS S F +S P+ A +S AC + + ++SS
Sbjct: 46 SSSRASSSLFARSVSPYAAARRSDACAYASSSSSS 80
>02_04_0613 + 24392238-24393550,24394585-24394687,24395153-24395257
Length = 506
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/80 (23%), Positives = 32/80 (40%)
Frame = +1
Query: 250 NYLIINN*HVTVPIEKKNLSKTFVLLLVSCWRLFLRNGLVGELSRLERGPLVPLVVVDNG 429
NYL+I T+ + KN++ T+ + C L + P V +V+ +
Sbjct: 59 NYLVIQRFKKTITSDPKNITATWTGHDI-CGNTTYLGFYCAALPGRTKKPTVTVVIFNGY 117
Query: 430 GKHGEHADSFDGHLPTVVQF 489
G + F HLP + F
Sbjct: 118 GLRAPKLEGFIDHLPDLALF 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,256,226
Number of Sequences: 37544
Number of extensions: 300740
Number of successful extensions: 695
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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