Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0116.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8522| Best HMM Match : Cytochrom_C1 (HMM E-Value=1.2e-06)           40   0.001
SB_44854| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.31 
SB_47752| Best HMM Match : RVT_1 (HMM E-Value=0.047)                   31   0.93 
SB_48624| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            28   6.6  

>SB_8522| Best HMM Match : Cytochrom_C1 (HMM E-Value=1.2e-06)
          Length = 127

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/21 (80%), Positives = 18/21 (85%)
 Frame = -3

Query: 572 LEYSDGTPATASQLAKDVATF 510
           +EY DGTPAT SQLAKDV TF
Sbjct: 45  IEYEDGTPATTSQLAKDVCTF 65


>SB_44854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 890

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -2

Query: 531 RQGCCDFLKWC----SEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWS 394
           R GC  + K+      E ELDD  Q   K     SM + +VY+++ H WS
Sbjct: 698 RDGCVRYGKYIVTKIDEEELDDHTQRVFKLRCHGSMDSLLVYHFQYHNWS 747


>SB_47752| Best HMM Match : RVT_1 (HMM E-Value=0.047)
          Length = 727

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -2

Query: 519 CDFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKPVSKK 349
           CD L W +EP + D R +  +    F  L ++   + RHK S   S + +  P  +K
Sbjct: 315 CDDLVWVTEPGVPDNR-VRERVSAEFEHLISIAAKHPRHKASKENSNRGSSLPTDRK 370


>SB_48624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 813

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 476 RSSSSGSEHHFRKSQHPWRAVTQSPACRHCTQAASSNRTC 595
           +SSSSG E +    +H  R   + P C HC +   + R C
Sbjct: 61  KSSSSGGEVNAMAGEH--RRRNKGPRCHHCHKFGHTKRDC 98


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 443 NMPIALMVICRRSSSSGSEHHFRKSQHPWRAVTQSPA 553
           N  I +++I R S++  + HH R+S  P  + TQSP+
Sbjct: 270 NNTITIIIITRASTTIITSHH-RRSSPPSTSPTQSPS 305


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,004,176
Number of Sequences: 59808
Number of extensions: 357535
Number of successful extensions: 913
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)