Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0116.Seq
(598 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X06994-1|CAA30052.1| 325|Homo sapiens protein ( Human mRNA for ... 75 3e-13
M16597-1|AAA35730.1| 227|Homo sapiens protein ( Human cytochrom... 75 3e-13
J04444-1|AAA52135.1| 325|Homo sapiens protein ( Human cytochrom... 75 3e-13
DQ300360-1|ABB96244.1| 325|Homo sapiens cytochrome c-1 protein. 75 3e-13
CR541674-1|CAG46475.1| 325|Homo sapiens CYC1 protein. 75 3e-13
BT019798-1|AAV38601.1| 325|Homo sapiens cytochrome c-1 protein. 75 3e-13
BC024650-1|AAH24650.1| 315|Homo sapiens Unknown (protein for IM... 75 3e-13
BC020566-1|AAH20566.1| 325|Homo sapiens cytochrome c-1 protein. 75 3e-13
BC015616-1|AAH15616.1| 325|Homo sapiens cytochrome c-1 protein. 75 3e-13
BC001006-1|AAH01006.1| 325|Homo sapiens cytochrome c-1 protein. 75 3e-13
U28413-1|AAA82605.1| 396|Homo sapiens CSA protein protein. 30 5.4
CR536563-1|CAG38800.1| 396|Homo sapiens CKN1 protein. 30 5.4
BT020021-1|AAV38824.1| 396|Homo sapiens Cockayne syndrome 1 (cl... 30 5.4
AY213194-1|AAO21128.1| 396|Homo sapiens Cockayne syndrome 1 (cl... 30 5.4
BC101478-1|AAI01479.1| 949|Homo sapiens zinc finger, CCHC domai... 29 9.5
AL117532-1|CAB55981.1| 845|Homo sapiens hypothetical protein pr... 29 9.5
AB030243-1|BAB83129.1| 949|Homo sapiens BDG-29 protein. 29 9.5
AB011151-1|BAA25505.2| 910|Homo sapiens KIAA0579 protein protein. 29 9.5
>X06994-1|CAA30052.1| 325|Homo sapiens protein ( Human mRNA for
cytochrome c1. ).
Length = 325
Score = 74.5 bits (175), Expect = 3e-13
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = -2
Query: 519 CDFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKP 361
C FL+W SEPE D R++M +K + M ++L +VY KRHKWS LKSRKLAY+P
Sbjct: 271 CTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKLAYRP 323
Score = 41.1 bits (92), Expect = 0.003
Identities = 19/31 (61%), Positives = 21/31 (67%)
Frame = -3
Query: 581 TKQLEYSDGTPATASQLAKDVATF*NGAQNP 489
T LE+ DGTPAT SQ+AKDV TF A P
Sbjct: 250 TDVLEFDDGTPATMSQIAKDVCTFLRWASEP 280
>M16597-1|AAA35730.1| 227|Homo sapiens protein ( Human cytochrome
c1 mRNA, partial cds. ).
Length = 227
Score = 74.5 bits (175), Expect = 3e-13
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = -2
Query: 519 CDFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKP 361
C FL+W SEPE D R++M +K + M ++L +VY KRHKWS LKSRKLAY+P
Sbjct: 173 CTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKLAYRP 225
Score = 41.1 bits (92), Expect = 0.003
Identities = 19/31 (61%), Positives = 21/31 (67%)
Frame = -3
Query: 581 TKQLEYSDGTPATASQLAKDVATF*NGAQNP 489
T LE+ DGTPAT SQ+AKDV TF A P
Sbjct: 152 TDVLEFDDGTPATMSQIAKDVCTFLRWASEP 182
>J04444-1|AAA52135.1| 325|Homo sapiens protein ( Human cytochrome
c-1 gene, complete cds. ).
Length = 325
Score = 74.5 bits (175), Expect = 3e-13
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = -2
Query: 519 CDFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKP 361
C FL+W SEPE D R++M +K + M ++L +VY KRHKWS LKSRKLAY+P
Sbjct: 271 CTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKLAYRP 323
Score = 41.1 bits (92), Expect = 0.003
Identities = 19/31 (61%), Positives = 21/31 (67%)
Frame = -3
Query: 581 TKQLEYSDGTPATASQLAKDVATF*NGAQNP 489
T LE+ DGTPAT SQ+AKDV TF A P
Sbjct: 250 TDVLEFDDGTPATMSQIAKDVCTFLRWASEP 280
>DQ300360-1|ABB96244.1| 325|Homo sapiens cytochrome c-1 protein.
Length = 325
Score = 74.5 bits (175), Expect = 3e-13
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = -2
Query: 519 CDFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKP 361
C FL+W SEPE D R++M +K + M ++L +VY KRHKWS LKSRKLAY+P
Sbjct: 271 CTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKLAYRP 323
Score = 41.1 bits (92), Expect = 0.003
Identities = 19/31 (61%), Positives = 21/31 (67%)
Frame = -3
Query: 581 TKQLEYSDGTPATASQLAKDVATF*NGAQNP 489
T LE+ DGTPAT SQ+AKDV TF A P
Sbjct: 250 TDVLEFDDGTPATMSQIAKDVCTFLRWASEP 280
>CR541674-1|CAG46475.1| 325|Homo sapiens CYC1 protein.
Length = 325
Score = 74.5 bits (175), Expect = 3e-13
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = -2
Query: 519 CDFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKP 361
C FL+W SEPE D R++M +K + M ++L +VY KRHKWS LKSRKLAY+P
Sbjct: 271 CTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKLAYRP 323
Score = 41.1 bits (92), Expect = 0.003
Identities = 19/31 (61%), Positives = 21/31 (67%)
Frame = -3
Query: 581 TKQLEYSDGTPATASQLAKDVATF*NGAQNP 489
T LE+ DGTPAT SQ+AKDV TF A P
Sbjct: 250 TDVLEFDDGTPATMSQIAKDVCTFLRWASEP 280
>BT019798-1|AAV38601.1| 325|Homo sapiens cytochrome c-1 protein.
Length = 325
Score = 74.5 bits (175), Expect = 3e-13
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = -2
Query: 519 CDFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKP 361
C FL+W SEPE D R++M +K + M ++L +VY KRHKWS LKSRKLAY+P
Sbjct: 271 CTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKLAYRP 323
Score = 41.1 bits (92), Expect = 0.003
Identities = 19/31 (61%), Positives = 21/31 (67%)
Frame = -3
Query: 581 TKQLEYSDGTPATASQLAKDVATF*NGAQNP 489
T LE+ DGTPAT SQ+AKDV TF A P
Sbjct: 250 TDVLEFDDGTPATMSQIAKDVCTFLRWASEP 280
>BC024650-1|AAH24650.1| 315|Homo sapiens Unknown (protein for
IMAGE:4470223) protein.
Length = 315
Score = 74.5 bits (175), Expect = 3e-13
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = -2
Query: 519 CDFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKP 361
C FL+W SEPE D R++M +K + M ++L +VY KRHKWS LKSRKLAY+P
Sbjct: 261 CTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKLAYRP 313
Score = 41.1 bits (92), Expect = 0.003
Identities = 19/31 (61%), Positives = 21/31 (67%)
Frame = -3
Query: 581 TKQLEYSDGTPATASQLAKDVATF*NGAQNP 489
T LE+ DGTPAT SQ+AKDV TF A P
Sbjct: 240 TDVLEFDDGTPATMSQIAKDVCTFLRWASEP 270
>BC020566-1|AAH20566.1| 325|Homo sapiens cytochrome c-1 protein.
Length = 325
Score = 74.5 bits (175), Expect = 3e-13
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = -2
Query: 519 CDFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKP 361
C FL+W SEPE D R++M +K + M ++L +VY KRHKWS LKSRKLAY+P
Sbjct: 271 CTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKLAYRP 323
Score = 41.1 bits (92), Expect = 0.003
Identities = 19/31 (61%), Positives = 21/31 (67%)
Frame = -3
Query: 581 TKQLEYSDGTPATASQLAKDVATF*NGAQNP 489
T LE+ DGTPAT SQ+AKDV TF A P
Sbjct: 250 TDVLEFDDGTPATMSQIAKDVCTFLRWASEP 280
>BC015616-1|AAH15616.1| 325|Homo sapiens cytochrome c-1 protein.
Length = 325
Score = 74.5 bits (175), Expect = 3e-13
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = -2
Query: 519 CDFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKP 361
C FL+W SEPE D R++M +K + M ++L +VY KRHKWS LKSRKLAY+P
Sbjct: 271 CTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKLAYRP 323
Score = 41.1 bits (92), Expect = 0.003
Identities = 19/31 (61%), Positives = 21/31 (67%)
Frame = -3
Query: 581 TKQLEYSDGTPATASQLAKDVATF*NGAQNP 489
T LE+ DGTPAT SQ+AKDV TF A P
Sbjct: 250 TDVLEFDDGTPATMSQIAKDVCTFLRWASEP 280
>BC001006-1|AAH01006.1| 325|Homo sapiens cytochrome c-1 protein.
Length = 325
Score = 74.5 bits (175), Expect = 3e-13
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = -2
Query: 519 CDFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKP 361
C FL+W SEPE D R++M +K + M ++L +VY KRHKWS LKSRKLAY+P
Sbjct: 271 CTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKLAYRP 323
Score = 41.1 bits (92), Expect = 0.003
Identities = 19/31 (61%), Positives = 21/31 (67%)
Frame = -3
Query: 581 TKQLEYSDGTPATASQLAKDVATF*NGAQNP 489
T LE+ DGTPAT SQ+AKDV TF A P
Sbjct: 250 TDVLEFDDGTPATMSQIAKDVCTFLRWASEP 280
>U28413-1|AAA82605.1| 396|Homo sapiens CSA protein protein.
Length = 396
Score = 30.3 bits (65), Expect = 5.4
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 439 GEHADSFDGHLPTVVQFGF*APFQKVATSLASCDAVAGVPSLY 567
GE GH TV F + FQ++ + C+ +A VPSLY
Sbjct: 324 GEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366
>CR536563-1|CAG38800.1| 396|Homo sapiens CKN1 protein.
Length = 396
Score = 30.3 bits (65), Expect = 5.4
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 439 GEHADSFDGHLPTVVQFGF*APFQKVATSLASCDAVAGVPSLY 567
GE GH TV F + FQ++ + C+ +A VPSLY
Sbjct: 324 GEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366
>BT020021-1|AAV38824.1| 396|Homo sapiens Cockayne syndrome 1
(classical) protein.
Length = 396
Score = 30.3 bits (65), Expect = 5.4
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 439 GEHADSFDGHLPTVVQFGF*APFQKVATSLASCDAVAGVPSLY 567
GE GH TV F + FQ++ + C+ +A VPSLY
Sbjct: 324 GEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366
>AY213194-1|AAO21128.1| 396|Homo sapiens Cockayne syndrome 1
(classical) protein.
Length = 396
Score = 30.3 bits (65), Expect = 5.4
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 439 GEHADSFDGHLPTVVQFGF*APFQKVATSLASCDAVAGVPSLY 567
GE GH TV F + FQ++ + C+ +A VPSLY
Sbjct: 324 GEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366
>BC101478-1|AAI01479.1| 949|Homo sapiens zinc finger, CCHC domain
containing 14 protein.
Length = 949
Score = 29.5 bits (63), Expect = 9.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 479 SSSSGSEHHFRKSQHPWRAVTQSPACRHCTQAASS 583
SS SG++HH QHP + P C H A S+
Sbjct: 240 SSQSGAQHH---GQHPAGSAAPLPHCSHAGSAGSA 271
>AL117532-1|CAB55981.1| 845|Homo sapiens hypothetical protein
protein.
Length = 845
Score = 29.5 bits (63), Expect = 9.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 479 SSSSGSEHHFRKSQHPWRAVTQSPACRHCTQAASS 583
SS SG++HH QHP + P C H A S+
Sbjct: 123 SSQSGAQHH---GQHPAGSAAPLPHCSHAGSAGSA 154
>AB030243-1|BAB83129.1| 949|Homo sapiens BDG-29 protein.
Length = 949
Score = 29.5 bits (63), Expect = 9.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 479 SSSSGSEHHFRKSQHPWRAVTQSPACRHCTQAASS 583
SS SG++HH QHP + P C H A S+
Sbjct: 240 SSQSGAQHH---GQHPAGSAAPLPHCSHAGSAGSA 271
>AB011151-1|BAA25505.2| 910|Homo sapiens KIAA0579 protein protein.
Length = 910
Score = 29.5 bits (63), Expect = 9.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 479 SSSSGSEHHFRKSQHPWRAVTQSPACRHCTQAASS 583
SS SG++HH QHP + P C H A S+
Sbjct: 201 SSQSGAQHH---GQHPAGSAAPLPHCSHAGSAGSA 232
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,279,543
Number of Sequences: 237096
Number of extensions: 1614752
Number of successful extensions: 3096
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3092
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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