Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0116.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75533-7|CAA99820.1|  285|Caenorhabditis elegans Hypothetical pr...    48   4e-06
Z81575-9|CAB04635.1|  130|Caenorhabditis elegans Hypothetical pr...    30   1.1  

>Z75533-7|CAA99820.1|  285|Caenorhabditis elegans Hypothetical
           protein C54G4.8 protein.
          Length = 285

 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 21/58 (36%), Positives = 32/58 (55%)
 Frame = -2

Query: 513 FLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYKPVSKK*TP 340
           F+ W +EP  D R++  +K   +   +A V+ Y KRH WS  KS+K  +K V  +  P
Sbjct: 225 FMHWAAEPFHDTRKKWALKIAALIPFVAVVLIYGKRHIWSFTKSQKFLFKTVKGREPP 282



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 20/42 (47%), Positives = 26/42 (61%)
 Frame = -3

Query: 572 LEYSDGTPATASQLAKDVATF*NGAQNPNWTTVGR*PSKLSA 447
           +EY DGTPAT SQ AKDV+ F + A  P   T  +   K++A
Sbjct: 205 IEYKDGTPATMSQQAKDVSAFMHWAAEPFHDTRKKWALKIAA 246


>Z81575-9|CAB04635.1|  130|Caenorhabditis elegans Hypothetical
           protein R08H2.10 protein.
          Length = 130

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 81  DHLTLQFDCATASQWQNAINIIT 149
           DH+TL FDCAT SQ +  +  +T
Sbjct: 26  DHVTLSFDCATTSQKKITLKNVT 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,277,880
Number of Sequences: 27780
Number of extensions: 269253
Number of successful extensions: 645
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)