Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0116.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   6.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 462 WSSADGRPV 488
           WS+ADG PV
Sbjct: 64  WSTADGHPV 72


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 462 WSSADGRPV 488
           WS+ADG PV
Sbjct: 64  WSTADGHPV 72


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 105 CATASQWQNAIN 140
           C T  QW N+IN
Sbjct: 412 CRTPFQWDNSIN 423


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 142 MFIAFCHCEAVAQSNCNVR*SVGN 71
           +F+AF   ++  +S C+VR S  +
Sbjct: 4   VFVAFLPVKSFRESRCSVRCSAAS 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,708
Number of Sequences: 438
Number of extensions: 3414
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)