Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0114.Seq
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 132 2e-31
03_01_0547 + 4093196-4093657,4094267-4095148 132 2e-31
03_01_0544 + 4082528-4082989,4083585-4084466 132 2e-31
03_01_0543 + 4076981-4077442,4078145-4079026 132 2e-31
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 50 2e-06
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 47 1e-05
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 47 1e-05
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 40 0.002
09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959 29 3.2
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 4.2
04_04_0295 - 24212526-24212684,24213066-24213218,24213497-242136... 29 4.2
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 28 7.4
10_08_0450 - 18030022-18030198,18030326-18030600,18030696-180307... 27 9.7
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 27 9.7
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 132 bits (319), Expect = 2e-31
Identities = 68/132 (51%), Positives = 88/132 (66%)
Frame = -2
Query: 647 RWLCAGDSKNNPPKGAADFTAQVIVL*PSWSNLKRLHTSLGLPHCPLACKFAEIKEKVDR 468
R A +SK++P K AA FT+QVI++ L +A KFAE+ K+DR
Sbjct: 310 RGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDR 369
Query: 467 RTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 288
R+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 370 RSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
Query: 287 NFKEAGGGKVTK 252
K+ G KVTK
Sbjct: 430 EKKDPTGAKVTK 441
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 132 bits (319), Expect = 2e-31
Identities = 68/132 (51%), Positives = 88/132 (66%)
Frame = -2
Query: 647 RWLCAGDSKNNPPKGAADFTAQVIVL*PSWSNLKRLHTSLGLPHCPLACKFAEIKEKVDR 468
R A +SK++P K AA FT+QVI++ L +A KFAE+ K+DR
Sbjct: 310 RGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDR 369
Query: 467 RTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 288
R+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 370 RSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
Query: 287 NFKEAGGGKVTK 252
K+ G KVTK
Sbjct: 430 EKKDPTGAKVTK 441
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 132 bits (319), Expect = 2e-31
Identities = 68/132 (51%), Positives = 88/132 (66%)
Frame = -2
Query: 647 RWLCAGDSKNNPPKGAADFTAQVIVL*PSWSNLKRLHTSLGLPHCPLACKFAEIKEKVDR 468
R A +SK++P K AA FT+QVI++ L +A KFAE+ K+DR
Sbjct: 310 RGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDR 369
Query: 467 RTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 288
R+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 370 RSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
Query: 287 NFKEAGGGKVTK 252
K+ G KVTK
Sbjct: 430 EKKDPTGAKVTK 441
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 132 bits (319), Expect = 2e-31
Identities = 68/132 (51%), Positives = 88/132 (66%)
Frame = -2
Query: 647 RWLCAGDSKNNPPKGAADFTAQVIVL*PSWSNLKRLHTSLGLPHCPLACKFAEIKEKVDR 468
R A +SK++P K AA FT+QVI++ L +A KFAE+ K+DR
Sbjct: 310 RGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDR 369
Query: 467 RTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 288
R+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 370 RSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
Query: 287 NFKEAGGGKVTK 252
K+ G KVTK
Sbjct: 430 EKKDPTGAKVTK 441
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/74 (28%), Positives = 41/74 (55%)
Frame = -2
Query: 509 LACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 330
++ +I ++++TGK+++ P+ + S A++ + K +CVE F LGR +R
Sbjct: 577 VSASMVKILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLR 636
Query: 329 DMRQTVAVGVIKAV 288
T+AVG++ V
Sbjct: 637 SQGNTIAVGIVSRV 650
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = -2
Query: 518 HCPLACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 339
H A + +I +D+ GK ++ P+ +KS A+V + P+CV+ F + LGR
Sbjct: 599 HVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRA 657
Query: 338 AVRDMRQTVAVGVI 297
+R T+AVGV+
Sbjct: 658 FLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = -2
Query: 518 HCPLACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 339
H A + +I +D+ GK ++ P+ +KS A+V + P+CV+ F + LGR
Sbjct: 599 HVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRA 657
Query: 338 AVRDMRQTVAVGVI 297
+R T+AVGV+
Sbjct: 658 FLRSSGSTIAVGVV 671
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Frame = -2
Query: 503 CKFAEIKEKVDRRTGKSTEVNPKS-------IKSGDAAIVNLVPSKPLCVESFQEFPPLG 345
C+ ++ E++D + K + K +K+G + + + +C+E+F +FP LG
Sbjct: 351 CEIVDLIEEIDMKKKKEADPKKKKPKRKPLFVKNGAVVVCRIQVNNLICIENFSDFPQLG 410
Query: 344 RFAVR 330
RF +R
Sbjct: 411 RFTLR 415
>09_02_0484 + 9804351-9805203,9806204-9806760,9807243-9807959
Length = 708
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +1
Query: 415 ASPDLMDFGLTSVDLPVRRSTFSLISANLQASG 513
A+ DLM G++ V+LPVRR+ F++ L +SG
Sbjct: 580 ATLDLMYSGISMVNLPVRRNHFAVSIFFLTSSG 612
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 79 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 159
N M PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684
>04_04_0295 -
24212526-24212684,24213066-24213218,24213497-24213601,
24213694-24213913,24214033-24214199,24214323-24214497,
24214627-24214799,24214914-24214983,24215401-24215900
Length = 573
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = -2
Query: 632 GDSKNNPPKGAADFTAQVIVL*PSWSNLKRLHTSLGLP 519
G +N PP+ D A+++ + P W+ + R+ + +P
Sbjct: 361 GRYRNYPPELLVDIVARILSMVPPWTRVYRVQRDIPMP 398
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +1
Query: 292 ALMTPTATVCLMSRTAKRPRGGNSWKDSTHRGLEGTKLTMAASPDLMDFGLTSVDLPVRR 471
A+ P TV + T ++ RG K +GL G KLT S L LT ++ +R
Sbjct: 282 AIAYPMPTVNPVESTPRKGRGRPRKKPVEIKGLSGIKLTEDLSTALSPIALTCMEPKKKR 341
>10_08_0450 -
18030022-18030198,18030326-18030600,18030696-18030776,
18030873-18030984
Length = 214
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = -2
Query: 512 PLACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSK-PLCVESFQEFPPLG 345
PLA FA +EK++R+T +S+ V+ K K+ ++ + K V+ F+E LG
Sbjct: 13 PLA-SFAYAEEKIERKTSRSSLVHKKGKKNSIIYRMSKLSQKTDSYVQGFKEHITLG 68
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 295 LMTPTATVCLMSRTAKRPRGGNSWKDST 378
LM T +VC S+ + P G W DST
Sbjct: 624 LMGKTVSVCERSKEHRVPTMGKGWSDST 651
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,138,659
Number of Sequences: 37544
Number of extensions: 344081
Number of successful extensions: 861
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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