Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0114.Seq
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation fact...   141   3e-34
U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation fact...   141   3e-34
U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation fact...   141   3e-34
Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical pr...    50   2e-06
Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical pr...    41   9e-04
Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical pr...    41   9e-04
AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical...    29   2.8  

>U51994-7|AAO21384.1|  429|Caenorhabditis elegans Elongation factor
           protein 4, isoformd protein.
          Length = 429

 Score =  141 bits (342), Expect = 3e-34
 Identities = 73/126 (57%), Positives = 85/126 (67%)
 Frame = -2

Query: 629 DSKNNPPKGAADFTAQVIVL*PSWSNLKRLHTSLGLPHCPLACKFAEIKEKVDRRTGKST 450
           DSK +P K A  F AQVI++             L      +ACKF E+KEKVDRRTGK  
Sbjct: 294 DSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKV 353

Query: 449 EVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAG 270
           E  PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V   +  
Sbjct: 354 EDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSDGS 413

Query: 269 GGKVTK 252
            GKVTK
Sbjct: 414 SGKVTK 419


>U51994-6|AAA96068.1|  463|Caenorhabditis elegans Elongation factor
           protein 4, isoforma protein.
          Length = 463

 Score =  141 bits (342), Expect = 3e-34
 Identities = 73/126 (57%), Positives = 85/126 (67%)
 Frame = -2

Query: 629 DSKNNPPKGAADFTAQVIVL*PSWSNLKRLHTSLGLPHCPLACKFAEIKEKVDRRTGKST 450
           DSK +P K A  F AQVI++             L      +ACKF E+KEKVDRRTGK  
Sbjct: 328 DSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKV 387

Query: 449 EVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAG 270
           E  PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V   +  
Sbjct: 388 EDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSDGS 447

Query: 269 GGKVTK 252
            GKVTK
Sbjct: 448 SGKVTK 453


>U40935-2|AAA81688.1|  463|Caenorhabditis elegans Elongation factor
           protein 3 protein.
          Length = 463

 Score =  141 bits (342), Expect = 3e-34
 Identities = 73/126 (57%), Positives = 85/126 (67%)
 Frame = -2

Query: 629 DSKNNPPKGAADFTAQVIVL*PSWSNLKRLHTSLGLPHCPLACKFAEIKEKVDRRTGKST 450
           DSK +P K A  F AQVI++             L      +ACKF E+KEKVDRRTGK  
Sbjct: 328 DSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKV 387

Query: 449 EVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAG 270
           E  PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V   +  
Sbjct: 388 EDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSVEKSDGS 447

Query: 269 GGKVTK 252
            GKVTK
Sbjct: 448 SGKVTK 453


>Z92835-1|CAB07395.2|  532|Caenorhabditis elegans Hypothetical
           protein H19N07.1 protein.
          Length = 532

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
 Frame = -2

Query: 476 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-V 300
           +D++TG+      K +K  +  I+ L   +P  +E F+E+P LGRF +RD  +T+A+G V
Sbjct: 470 IDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKV 527

Query: 299 IKAV 288
           +K V
Sbjct: 528 LKVV 531


>Z81098-7|CAI79193.2|  592|Caenorhabditis elegans Hypothetical
           protein K07A12.4b protein.
          Length = 592

 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 18/72 (25%), Positives = 35/72 (48%)
 Frame = -2

Query: 503 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 324
           C F  +   +++  G+  +  P+ I  G +A+V +     + +E+F     LGR   R  
Sbjct: 517 CTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAG 576

Query: 323 RQTVAVGVIKAV 288
             T+A G+++ V
Sbjct: 577 GNTIAAGIVEKV 588


>Z81098-6|CAB03180.3|  610|Caenorhabditis elegans Hypothetical
           protein K07A12.4a protein.
          Length = 610

 Score = 40.7 bits (91), Expect = 9e-04
 Identities = 18/72 (25%), Positives = 35/72 (48%)
 Frame = -2

Query: 503 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 324
           C F  +   +++  G+  +  P+ I  G +A+V +     + +E+F     LGR   R  
Sbjct: 535 CTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRAG 594

Query: 323 RQTVAVGVIKAV 288
             T+A G+++ V
Sbjct: 595 GNTIAAGIVEKV 606


>AL033514-38|CAA22111.2|  341|Caenorhabditis elegans Hypothetical
           protein Y75B8A.33 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -3

Query: 148 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 41
           KR  NS++F I+   C +  F   Y++   +   +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,726,800
Number of Sequences: 27780
Number of extensions: 301551
Number of successful extensions: 818
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)