Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0114.Seq
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   184   7e-49
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   178   4e-47
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...   103   1e-24
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    24   1.1  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    24   1.1  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    24   1.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   5.9  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  184 bits (448), Expect = 7e-49
 Identities = 96/132 (72%), Positives = 102/132 (77%)
 Frame = -2

Query: 647 RWLCAGDSKNNPPKGAADFTAQVIVL*PSWSNLKRLHTSLGLPHCPLACKFAEIKEKVDR 468
           R   AGDSKNNPPKGAADFTAQVIVL             L      +ACKFA+IKEK DR
Sbjct: 322 RGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFADIKEKCDR 381

Query: 467 RTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 288
           R GK+TE NPKSIKSGDAAIV LVPSKP+C E+FQEFPPLGRFAVRDMRQTVAVGVIKAV
Sbjct: 382 RNGKTTEENPKSIKSGDAAIVMLVPSKPMCAEAFQEFPPLGRFAVRDMRQTVAVGVIKAV 441

Query: 287 NFKEAGGGKVTK 252
            FK+A  GKVTK
Sbjct: 442 TFKDA-AGKVTK 452


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  178 bits (433), Expect = 4e-47
 Identities = 93/132 (70%), Positives = 101/132 (76%)
 Frame = -2

Query: 647 RWLCAGDSKNNPPKGAADFTAQVIVL*PSWSNLKRLHTSLGLPHCPLACKFAEIKEKVDR 468
           R   AGDSKN PP+GAADFTAQVIVL             L      +ACKFAEIKEK DR
Sbjct: 322 RGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDR 381

Query: 467 RTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 288
           RTGK+TE NPKSIKSGDAAIV L P+KP+CVE+FQEFPPLGRFAVRDMRQTVAVGVIK+V
Sbjct: 382 RTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVAVGVIKSV 441

Query: 287 NFKEAGGGKVTK 252
            FK+   GKVTK
Sbjct: 442 TFKDT-QGKVTK 452


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score =  103 bits (248), Expect = 1e-24
 Identities = 56/87 (64%), Positives = 60/87 (68%)
 Frame = -2

Query: 647 RWLCAGDSKNNPPKGAADFTAQVIVL*PSWSNLKRLHTSLGLPHCPLACKFAEIKEKVDR 468
           R   AGDSKN PP+GAADFTAQVIVL             L      +ACKFAEIKEK DR
Sbjct: 33  RGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDR 92

Query: 467 RTGKSTEVNPKSIKSGDAAIVNLVPSK 387
           RTGK+TE NPKSIKSGDAAIV L P+K
Sbjct: 93  RTGKTTEENPKSIKSGDAAIVMLQPTK 119


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 176 KYRSCMKNCAVNSSSYFLPLVAFS 247
           K+  C+KN A   SSYF+  + F+
Sbjct: 94  KFYDCLKNSADTISSYFVGKMYFN 117


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 176 KYRSCMKNCAVNSSSYFLPLVAFS 247
           K+  C+KN A   SSYF+  + F+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFN 122


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 176 KYRSCMKNCAVNSSSYFLPLVAFS 247
           K+  C+KN A   SSYF+  + F+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFN 122


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 137 CSPFFLRNTFR*MKYRSCMKN 199
           C  FF R+  + ++YR C KN
Sbjct: 87  CKGFFRRSIQQKIQYRPCTKN 107


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 623 KNNPPKGAADFTAQVIVL*PSWSN 552
           +NN P G   +  +V +  P W N
Sbjct: 49  ENNMPNGMQIWNDKVFITIPRWKN 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,750
Number of Sequences: 438
Number of extensions: 3549
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)