Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0113.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    25   0.64 
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    25   0.64 
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     23   1.5  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   7.9  

>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 92  VYTCNVNYPCFCF 54
           +YT N+ Y CFCF
Sbjct: 316 IYTFNLFYLCFCF 328


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 92  VYTCNVNYPCFCF 54
           +YT N+ Y CFCF
Sbjct: 272 IYTFNLFYLCFCF 284


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = -2

Query: 507 ANWVPGPPSRSTVSISLISNSRPLTEVTKEKVE 409
           ++W   PP R+ V +SL ++     ++ K++++
Sbjct: 35  SSWPGRPPKRAPVGLSLAASHLQQQQLKKQRLD 67


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 161 KFSTMSFNFSLCFY 120
           +F+T+ F+F  C+Y
Sbjct: 264 QFNTIVFSFCYCYY 277


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,673
Number of Sequences: 336
Number of extensions: 1996
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)