Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0113.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ...    27   1.6  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    27   2.7  

>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 6   FFHSNTFFYWKVKYRIKTKTRVVNITSVY 92
           F  ++T+FYW  K    T T +  IT+ Y
Sbjct: 99  FVLTDTYFYWFTKMTAMTGTEMAQITTPY 127


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -1

Query: 196 YIRRCCTNKSSLNLAQCHLIFPYAFIFD*TKPFERYTLVMLTTRVFVL 53
           Y+ RC   +  ++ A+ HL+F +    D     +R +L+ LTT + +L
Sbjct: 229 YLGRCHLYQRKIHQAKDHLLFSFLQCPDECYHQKRLSLIYLTTCLLIL 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,897,436
Number of Sequences: 5004
Number of extensions: 31474
Number of successful extensions: 81
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)