Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0113.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0582 + 30392297-30392677,30393786-30394039,30394175-303942...    31   0.92 
08_01_0202 - 1638978-1639571                                           30   1.6  
06_01_0942 - 7242389-7243160,7243293-7243822,7245878-7246095,724...    29   3.7  
02_05_0059 - 25482207-25482271,25482432-25482651                       29   3.7  
05_04_0286 + 19833114-19834053,19834149-19834165                       28   4.9  
04_02_0017 - 8572400-8572732,8572818-8572919,8573138-8573230,857...    28   4.9  
04_03_0832 + 20139299-20139520,20139822-20141114,20142697-201428...    27   8.6  
04_01_0360 - 4720997-4721812                                           27   8.6  

>01_06_0582 +
           30392297-30392677,30393786-30394039,30394175-30394298,
           30394484-30394588,30395913-30396035
          Length = 328

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +2

Query: 248 LKIKLGSXLSTACRRGCRTTAGSCYGRTAASCRC 349
           LKIK    L  A +RG R   GS  G +AA C C
Sbjct: 134 LKIKQKEALGVAEKRGGRRGTGSVIGSSAAGCVC 167


>08_01_0202 - 1638978-1639571
          Length = 197

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 433 GGDQREGGANGGDGNCSNC 377
           GG  R GG  GG G C NC
Sbjct: 164 GGGYRGGGGGGGGGGCYNC 182


>06_01_0942 -
           7242389-7243160,7243293-7243822,7245878-7246095,
           7246380-7246425
          Length = 521

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -1

Query: 517 LTIGELGTGPPLEVDGIDKLDIEFAAXDGGDQREGGANG 401
           ++IG+ G  P L+  G D+LDI       GD  +GG NG
Sbjct: 115 ISIGQGGYNPSLQAFGADQLDI-------GDDDDGGDNG 146


>02_05_0059 - 25482207-25482271,25482432-25482651
          Length = 94

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 433 GGDQREGGANGGDGNCSNC 377
           GG    GG NGG G+C+ C
Sbjct: 61  GGSVGRGGNNGGGGSCAKC 79


>05_04_0286 + 19833114-19834053,19834149-19834165
          Length = 318

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 293 GCRTTAGSCYGRTAASCRCCGCSWAAFLAV 382
           G R  +G+ YG  AA   CC  SW A  AV
Sbjct: 179 GGRRPSGAAYG-AAAPPECCAVSWDAIRAV 207


>04_02_0017 -
           8572400-8572732,8572818-8572919,8573138-8573230,
           8573391-8573519,8573781-8574025,8574184-8574453,
           8574590-8574752,8575965-8576063
          Length = 477

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
 Frame = -1

Query: 493 GPPLEVDGIDKLDIEFAA-XDGGDQREGG---ANGGD 395
           GP  E DG+++ +I  A+  DG DQ  GG   A+GGD
Sbjct: 83  GPADESDGLEEQNIHVASRGDGIDQGHGGNQVASGGD 119


>04_03_0832 +
           20139299-20139520,20139822-20141114,20142697-20142822,
           20143322-20143442,20144213-20144481
          Length = 676

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/16 (75%), Positives = 13/16 (81%), Gaps = 1/16 (6%)
 Frame = -1

Query: 436 DGGD-QREGGANGGDG 392
           DGGD QREGG +GG G
Sbjct: 197 DGGDGQREGGVSGGGG 212


>04_01_0360 - 4720997-4721812
          Length = 271

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 478 VDGIDKLDIEFAAXDGGDQREGGANGGDGN 389
           V+G  K + E    +GG + +GG++ GDG+
Sbjct: 139 VEGEGKGEGESGGREGGGETDGGSSAGDGD 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,161,716
Number of Sequences: 37544
Number of extensions: 220601
Number of successful extensions: 1090
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)