Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0113.Seq
         (598 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF457546-1|AAL68776.1|  182|Anopheles gambiae 30 kDa protein pro...    25   1.4  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    23   5.7  
AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    23   9.9  

>AF457546-1|AAL68776.1|  182|Anopheles gambiae 30 kDa protein
           protein.
          Length = 182

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = -1

Query: 508 GELGTGPPLEVDGIDKLDIEFAAXDGGDQREGGANGGD 395
           GE G G    V G D    E       D  EGG  GGD
Sbjct: 111 GEEGAGSDDAVSGADDETEESKDDAEEDSEEGGEEGGD 148


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 436 DGGDQREGGANGGDG 392
           D   +REGG NGG G
Sbjct: 239 DRDREREGGGNGGGG 253


>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 451 EFAAXDGGDQREGGANGGDGNCSNCQKGSP 362
           E  A D     EGG++ G G  S+ +KG P
Sbjct: 228 ESEASDDDSGTEGGSSQGGGG-SSSKKGGP 256


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 490,098
Number of Sequences: 2352
Number of extensions: 8431
Number of successful extensions: 26
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 57609459
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)