Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0113.Seq
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z37139-9|CAA85493.1| 396|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 28 4.4
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 28 4.4
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 28 4.4
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z81530-6|CAB04310.1| 329|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z81055-4|CAB02893.1| 824|Caenorhabditis elegans Hypothetical pr... 27 7.7
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 27 7.7
>Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical
protein F14F7.1 protein.
Length = 305
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 445 AAXDGGDQREGGANGGDGNCSNCQKGSP 362
A G Q +GG GG G CS C + P
Sbjct: 81 AGYGGYAQPQGGGGGGGGQCSTCCRPGP 108
>Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical
protein F35E8.7 protein.
Length = 288
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Frame = +2
Query: 284 CRRGCRTTAGSCYG--------RTAASCRCCGCSWAAFLAVAAISISPICSTFSLVTSVX 439
C C T+A SC T +C +W A +A+ + +CS S V ++
Sbjct: 102 CGYCCETSAYSCENPPLPSVNCSTIKPIQCTDPAWKAIIAMECPATCGLCSADSCVDAIE 161
Query: 440 GREFDIKLIDTVDLE 484
G +I++ + V L+
Sbjct: 162 GCANNIEICNAVKLQ 176
>Z37139-9|CAA85493.1| 396|Caenorhabditis elegans Hypothetical
protein C14B1.5 protein.
Length = 396
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/35 (25%), Positives = 23/35 (65%)
Frame = +2
Query: 380 VAAISISPICSTFSLVTSVXGREFDIKLIDTVDLE 484
+ +I I+ C+TF L+ GR+ ++K+++ ++ +
Sbjct: 254 IGSIEIARKCTTFGLIQGTLGRQGNLKVVEELEAQ 288
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Frame = +2
Query: 284 CRRGCRTTAGSCYGRTAASCR--CCGC 358
CRR C C R CR CCGC
Sbjct: 97 CRRCCTCCRTCCCTRCCTCCRPCCCGC 123
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Frame = +2
Query: 284 CRRGCRTTAGSCYGRTAASCR--CCGC 358
CRR C C R CR CCGC
Sbjct: 95 CRRCCTCCRTCCCTRCCTCCRPCCCGC 121
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Frame = +2
Query: 284 CRRGCRTTAGSCYGRTAASCR--CCGC 358
CRR C C R CR CCGC
Sbjct: 96 CRRCCTCCRTCCCTRCCTCCRPCCCGC 122
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Frame = +2
Query: 284 CRRGCRTTAGSCYGRTAASCR--CCGC 358
CRR C C R CR CCGC
Sbjct: 96 CRRCCTCCRTCCCTRCCTCCRPCCCGC 122
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Frame = +2
Query: 284 CRRGCRTTAGSCYGRTAASCR--CCGC 358
CRR C C R CR CCGC
Sbjct: 97 CRRCCTCCRTCCCTRCCTCCRPCCCGC 123
>Z81530-6|CAB04310.1| 329|Caenorhabditis elegans Hypothetical
protein F36D1.8 protein.
Length = 329
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 6 FFHSNTFFYWKVKYRIKTKTRVVNITSV 89
FF + +FY +KY I ++VN T V
Sbjct: 33 FFGAYFYFYGDIKYSIVVDEKIVNFTGV 60
>Z81055-4|CAB02893.1| 824|Caenorhabditis elegans Hypothetical
protein F01G10.5 protein.
Length = 824
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +1
Query: 46 TELKQKHG*LTLQVYTVQMALFNQI*KHREKLNDIVLNLN*ICSCNIDVYNLMK 207
+EL +K LT+QV +Q A N++ R+K +++ L + N+D+ L+K
Sbjct: 324 SELNEK---LTMQVKDLQDASENELASFRQKEKELIDELRMATNENVDLEELLK 374
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 433 GGDQREGGANGGDGNCSNC 377
GG QR GG GG G+C NC
Sbjct: 56 GGGQRGGG--GGGGSCYNC 72
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,764,278
Number of Sequences: 27780
Number of extensions: 193003
Number of successful extensions: 673
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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