Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0112.Seq
         (598 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q380W9 Cluster: Putative uncharacterized protein; n=1; ...    29   0.56 
UniRef50_Q4P652 Cluster: Pre-mRNA-splicing factor CEF1; n=1; Ust...    32   8.9  

>UniRef50_Q380W9 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 232

 Score = 29.5 bits (63), Expect(2) = 0.56
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 474 CDCSLLEIA-FALSFVQFYCYD*NGHHYYCSYY 569
           C CS   I  + L+ + ++ Y  + ++YYCSYY
Sbjct: 120 CYCSYYNIRIYTLTTLSYHYYYHHHYYYYCSYY 152



 Score = 25.8 bits (54), Expect(2) = 0.56
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 546 HHYYCSYYLSH 578
           H+YYCSYY  H
Sbjct: 171 HYYYCSYYNIH 181


>UniRef50_Q4P652 Cluster: Pre-mRNA-splicing factor CEF1; n=1;
           Ustilago maydis|Rep: Pre-mRNA-splicing factor CEF1 -
           Ustilago maydis (Smut fungus)
          Length = 820

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -2

Query: 510 RAQKQFQAVNSHRISQAVHRNLPRPL-MDLKAPSQQVNTRAANQRPVAVLALRVPVKVLH 334
           R   + +A +  R SQ V RNLPRP  +DL     Q+++R  ++  V +L  R   ++LH
Sbjct: 541 RQAAEEEARSEARRSQVVRRNLPRPAQVDLSRLHNQIDSRYRDR--VELLVARETAQLLH 598


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 433,584,471
Number of Sequences: 1657284
Number of extensions: 7198977
Number of successful extensions: 16163
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16042
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)