Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0112.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    23   2.0  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    22   4.5  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    22   4.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.0  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 346 HWHSKR*NCYWP 381
           HWHS R + Y+P
Sbjct: 70  HWHSPRFHAYFP 81


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +3

Query: 486 LLEIAFALSFVQFYCYD*NGHHYYCSYYLSH 578
           L   A  L F  FYCY     H Y    LS+
Sbjct: 8   LTAAAVFLLFYLFYCYKTIKQHIYSLISLSY 38


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +3

Query: 486 LLEIAFALSFVQFYCYD*NGHHYYCSYYLSH 578
           L   A  L F  FYCY     H Y    LS+
Sbjct: 8   LTAAAVFLLFYLFYCYKTIKQHIYSLISLSY 38


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 346  HWHSKR*NCYWP 381
            HW+ +R  C WP
Sbjct: 1136 HWNKERKICDWP 1147


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,232
Number of Sequences: 336
Number of extensions: 2026
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)