Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0112.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0085 + 663694-665022                                             28   6.5  
07_01_0086 + 672173-673603                                             27   8.6  
01_06_0789 - 32010131-32010330,32010438-32010866,32011658-320117...    27   8.6  

>07_01_0085 + 663694-665022
          Length = 442

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 254 VILFGHRSAPRLITIAGTMRW 192
           V+  GH S PRL TI G  RW
Sbjct: 149 VVAIGHYSQPRLPTIDGMDRW 169


>07_01_0086 + 672173-673603
          Length = 476

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 254 VILFGHRSAPRLITIAGTMRW 192
           V+  GH S PRL T+ G  RW
Sbjct: 172 VVAIGHYSQPRLPTVDGMDRW 192


>01_06_0789 -
           32010131-32010330,32010438-32010866,32011658-32011752,
           32011836-32011933,32012586-32012942,32013615-32013792,
           32013856-32013936,32014441-32014548,32014916-32015178
          Length = 602

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -2

Query: 474 RISQAVHRNLPRPLMDLKAPSQQVNTRAANQRPVAVLALRVPVK 343
           R    VH  LPRP + +  P  QV  R A  +PV    + VP+K
Sbjct: 48  RSHHVVHVPLPRPAVAVAVPVPQV--RPAQPQPVPRPPVAVPLK 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,402,978
Number of Sequences: 37544
Number of extensions: 187645
Number of successful extensions: 428
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)