Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0112.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              31   0.71 
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     28   5.0  
SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 486 LLEIAFALSFVQFYCYD*NGHHYYCSYYLSHFCYY 590
           +L   +   +  +YCY     +YYC YY   +CYY
Sbjct: 466 VLRYCYCYCYCYYYCYC--YCYYYCYYYCYCYCYY 498



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 471 FCDCSLLEIAFALSFVQFYCYD*NGHHYYCSYYLSHFCYY 590
           +C C      +   +  +YCY    + YYC YY   +CYY
Sbjct: 473 YCYCYYYCYCYCYYYCYYYCYC---YCYYCCYYC--YCYY 507



 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 468 KFCDCSLLEIAFALSFVQFYCYD*NGHHYYCSYYLSHFCYY 590
           ++C C      +   +  +YCY      YYC  Y  + CYY
Sbjct: 468 RYCYCYCYCYYYCYCYCYYYCY------YYCYCYCYYCCYY 502



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 525 YCYD*NGHHYYCSYYLSHFC 584
           YCY    HHYYC YY    C
Sbjct: 504 YCYY-YYHHYYCCYYCCCSC 522


>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/56 (32%), Positives = 22/56 (39%)
 Frame = +3

Query: 417 VLSDPSAASADFCELLEKFCDCSLLEIAFALSFVQFYCYD*NGHHYYCSYYLSHFC 584
           +LS     S   C  L   C C LL + + LS    YC     H  YC     H+C
Sbjct: 537 LLSVQYCLSITVCPSLS-VCYCPLLSVRYCLSVTVHYCLSATVH--YCLSATVHYC 589


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 546 HHYYCSYYLSHFCYY 590
           HH+YC Y    +CYY
Sbjct: 19  HHHYCCYCHHRYCYY 33



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 546 HHYYCSYYLSHFCYY 590
           HH YC Y   H+C+Y
Sbjct: 27  HHRYCYYRHHHYCWY 41


>SB_28794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 513 FVQFYCYD*NGHHYYCSYYLSHFCYY 590
           +  +Y Y    HHYY  YY  ++ YY
Sbjct: 120 YYYYYYYYYYYHHYYYYYYYYYYYYY 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,718,651
Number of Sequences: 59808
Number of extensions: 241800
Number of successful extensions: 608
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)