Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0112.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-3|AAL77185.1|  697|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF000263-1|AAK21462.1|  781|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF000263-2|AAK21464.1|  755|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AF000263-3|AAL77185.1|  697|Caenorhabditis elegans Hypothetical
           protein T08B2.7c protein.
          Length = 697

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -2

Query: 504 QKQFQAVNSHRISQAVHRNLPRPLMDLKAPSQQVNTRAANQRPVAVLALRVP 349
           QK+  +   H+ S  +  NL   L    AP+ Q   R   Q  VAV+ + +P
Sbjct: 24  QKEMLSRLVHQSSSTLRTNLSFRLFSQSAPAMQTTHRVEKQGDVAVVKIDLP 75


>AF000263-1|AAK21462.1|  781|Caenorhabditis elegans Hypothetical
           protein T08B2.7a protein.
          Length = 781

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -2

Query: 504 QKQFQAVNSHRISQAVHRNLPRPLMDLKAPSQQVNTRAANQRPVAVLALRVP 349
           QK+  +   H+ S  +  NL   L    AP+ Q   R   Q  VAV+ + +P
Sbjct: 24  QKEMLSRLVHQSSSTLRTNLSFRLFSQSAPAMQTTHRVEKQGDVAVVKIDLP 75


>AF000263-2|AAK21464.1|  755|Caenorhabditis elegans Hypothetical
           protein T08B2.7b protein.
          Length = 755

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 477 HRISQAVHRNLPRPLMDLKAPSQQVNTRAANQRPVAVLALRVP 349
           H+ S  +  NL   L    AP+ Q   R   Q  VAV+ + +P
Sbjct: 7   HQSSSTLRTNLSFRLFSQSAPAMQTTHRVEKQGDVAVVKIDLP 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,396,606
Number of Sequences: 27780
Number of extensions: 184709
Number of successful extensions: 418
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)