Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0112.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   1.7  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    23   1.7  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    23   1.7  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   6.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.9  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 96  ILCFAFSAHINIDKGSLICSSINEIIDESLQKPSHRARYGN*TRCGTVA 242
           +L   F +H +ID  + I +S  +  DE+       ARY     C  +A
Sbjct: 533 VLPSRFQSHPSIDSANTISNSSLQDYDETEFNGMELARYMGELNCDLIA 581


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 435 AASADFCELLEKFCDCSLLEIAF 503
           AA  D C +  K+ DC+L ++ F
Sbjct: 103 AADEDECMVARKYIDCALEKMKF 125


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 435 AASADFCELLEKFCDCSLLEIAF 503
           AA  D C +  K+ DC+L ++ F
Sbjct: 103 AADEDECMVARKYIDCALEKMKF 125


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 64  FCVLNVIKAIVYCV 105
           +C+ + +  IVYCV
Sbjct: 148 YCLFSFLNTIVYCV 161


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 196 DGFCNDSSIISLIELHIRLPLSILM*AENAKH 101
           D  C+ SSI +L+ + I   +++    + AKH
Sbjct: 266 DVTCSTSSIFNLVAISIDRYIAVTQPIKYAKH 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,582
Number of Sequences: 438
Number of extensions: 2431
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)