Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0112.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g30841.1 68416.m03967 2,3-biphosphoglycerate-independent phos...    28   5.4  
At3g43840.1 68416.m04690 expressed protein                             27   7.2  
At2g16530.2 68415.m01896 3-oxo-5-alpha-steroid 4-dehydrogenase f...    27   7.2  
At2g16530.1 68415.m01895 3-oxo-5-alpha-steroid 4-dehydrogenase f...    27   7.2  
At5g14310.1 68418.m01673 expressed protein low similarity to PrM...    27   9.5  

>At3g30841.1 68416.m03967 2,3-biphosphoglycerate-independent
           phosphoglycerate mutase-related /
           phosphoglyceromutase-related contains weak similarity to
           2,3-bisphosphoglycerate-independent phosphoglycerate
           mutase 1 (EC 5.4.2.1) (Phosphoglyceromutase 1)
           (BPG-independent PGAM 1) (aPGAM 1) (aPGAM-Mj1).
           (Swiss-Prot:Q59007) [Methanococcus jannaschii]
          Length = 495

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 132 DKGSLICSSINEIIDESLQKPSHRARYGN*TRCGTVAK 245
           ++G ++C++++ +  +S  +   R RY    RCG V K
Sbjct: 128 EEGPILCAALDGLKLQSFPEYEVRVRYATEHRCGVVVK 165


>At3g43840.1 68416.m04690 expressed protein
          Length = 84

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 251 ILFGHRSAPRLITIAGTMRWFL*RFVNYFVNR 156
           +LFG  +A        T RW+L +F NY  NR
Sbjct: 45  LLFGFVAANLTYAAGETHRWYLAKFENYPANR 76


>At2g16530.2 68415.m01896 3-oxo-5-alpha-steroid 4-dehydrogenase
           family protein / steroid 5-alpha-reductase family
           protein similar to Arabidopsis thaliana DET2
           [gi:1280611]; contains Pfam 3-oxo-5-alpha-steroid
           4-dehydrogenase domain PF02544
          Length = 342

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 251 ILFGHRSAPRLITIAGTMRWFL*RFVNYFVNR 156
           +LFG  +A        T RW+L +F NY  NR
Sbjct: 303 LLFGFVAANLTYAAGETHRWYLRKFENYPANR 334


>At2g16530.1 68415.m01895 3-oxo-5-alpha-steroid 4-dehydrogenase
           family protein / steroid 5-alpha-reductase family
           protein similar to Arabidopsis thaliana DET2
           [gi:1280611]; contains Pfam 3-oxo-5-alpha-steroid
           4-dehydrogenase domain PF02544
          Length = 343

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 251 ILFGHRSAPRLITIAGTMRWFL*RFVNYFVNR 156
           +LFG  +A        T RW+L +F NY  NR
Sbjct: 304 LLFGFVAANLTYAAGETHRWYLRKFENYPANR 335


>At5g14310.1 68418.m01673 expressed protein low similarity to PrMC3
           [Pinus radiata] GI:5487873
          Length = 446

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 414 WVL-SDPSAASADFCELLEKFCDCSLLEIAFALS 512
           WV  S  SAA+  FC  + K CD  +L + + L+
Sbjct: 162 WVSGSSDSAANDFFCRRIAKVCDVIVLAVGYRLA 195


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,474,176
Number of Sequences: 28952
Number of extensions: 159300
Number of successful extensions: 302
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)