Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0111.Seq
         (598 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0BRA8 Cluster: Chromosome undetermined scaffold_122, w...    35   1.7  
UniRef50_A6RQ20 Cluster: Putative uncharacterized protein; n=2; ...    33   5.1  
UniRef50_Q3WDH3 Cluster: Putative uncharacterized protein; n=1; ...    32   8.9  

>UniRef50_A0BRA8 Cluster: Chromosome undetermined scaffold_122,
           whole genome shotgun sequence; n=4; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_122,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 452

 Score = 34.7 bits (76), Expect = 1.7
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = -2

Query: 579 NKSNPGGNFLNLKFNTLPFFPPTYRFSLRGYSSYART---GR*AHGLNLREFANTSHSKS 409
           N + P    LN   N  P +PP    + +GY +YA+T    + A+    + + NT++   
Sbjct: 266 NPNQPPSQTLNYPQNQPPNYPPNMPPNQQGYPNYAQTMQHNQQAYPNQPQNYQNTNYQNP 325

Query: 408 SASQILRPDPNRDPSIHF 355
           + +Q  +P PN  P  ++
Sbjct: 326 TQNQ--QPYPNNQPPTNY 341


>UniRef50_A6RQ20 Cluster: Putative uncharacterized protein; n=2;
           Sclerotiniaceae|Rep: Putative uncharacterized protein -
           Botryotinia fuckeliana B05.10
          Length = 639

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +1

Query: 310 TKRILLKYKSHTNVVKVNRWIAIRIRPENLR 402
           TKR +L  ++  N VK N W+A+R+  +NL+
Sbjct: 36  TKRSVLNIQNMHNFVKANAWVALRLPSDNLK 66


>UniRef50_Q3WDH3 Cluster: Putative uncharacterized protein; n=1;
           Frankia sp. EAN1pec|Rep: Putative uncharacterized
           protein - Frankia sp. EAN1pec
          Length = 348

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 355 KVNRWIAIRIRPENLRSTALTMASVSKFSQIEPVSSPTRPRV 480
           ++  W+ IR RP   R T     S + ++ I  ++SP RP V
Sbjct: 138 RIPGWLLIRDRPRRQRLTVGWAGSATHYADIAEIASPLRPHV 179


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 545,836,161
Number of Sequences: 1657284
Number of extensions: 10384804
Number of successful extensions: 19972
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19970
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)