Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0111.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    27   2.7  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    27   2.7  
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch...    25   8.4  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    25   8.4  

>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = -3

Query: 434 LLTLAIVRAVLRRFSGRILIA-IHLFTLTTFVWLLYFNNMRFVTPHAIRTSHKTDSTLQD 258
           L ++ +V + +  F G IL+  + L  L    W ++F N  F +  A+  S K  S  Q 
Sbjct: 161 LNSIFVVSSCIGPFLGSILLLRVSLLQLYLISWTIHFINFVFHSLLAVFFSSKYTSYAQK 220

Query: 257 *DRPIVMLSYSL 222
             +PI+  + +L
Sbjct: 221 EGQPILNATENL 232


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +1

Query: 97  IVNRQLSLLINENIQ*HSIYICAVRHFYISVPTDLVVTILYDSEYDNITIG 249
           + +R LS  + +N+Q +++++   RH  IS+   L    +Y   +D +  G
Sbjct: 798 LYSRILSSKVRDNLQNNNLHVYLTRHPAISLLEALYTESVYSGLFDLVEYG 848


>SPCC1442.09 |trp3||anthranilate synthase component
           I|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 450 LNLREFANTSHSKSSASQILRPDPNR 373
           + + +F++  H  S  S +LRPD  R
Sbjct: 351 MTIEKFSHVQHLVSQVSGVLRPDKTR 376


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 328 KYKSHTNVVKVNRWIAIRIRPENLRSTALTMASVSKFSQIEPVS 459
           KY+ ++ V   NRWIA    P  L    L   +  K    EP+S
Sbjct: 19  KYEVYSEVNSSNRWIAKEDCPSPLEDVWLLKLAGHKRKLEEPLS 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,619
Number of Sequences: 5004
Number of extensions: 44313
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)