Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0111.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,158...    28   4.9  
07_01_0547 + 4052618-4052659,4055575-4055741,4055839-4056556,405...    28   6.5  
08_01_0386 + 3424561-3425346                                           27   8.6  

>09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,
            1584676-1584745,1585132-1585197,1586374-1586429,
            1587992-1588078,1588819-1589139,1589827-1589946,
            1590747-1590881,1591529-1591605,1591681-1591756,
            1592800-1592874,1592971-1593075,1593299-1593374,
            1594482-1594617,1594702-1594804,1595186-1595298,
            1596907-1597111,1597173-1597301,1597403-1597517,
            1597710-1597795,1599108-1599203,1599615-1599751,
            1600374-1600476,1601809-1601888,1602013-1602091,
            1602241-1602298,1602489-1602586,1602673-1602767,
            1602861-1602918
          Length = 1074

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = +1

Query: 85   RNRTIVNRQLSLLINENIQ*HSIYICAVRHFYISVPTDLVVTILYDSEYDNI--TIGLS* 258
            RN  ++ RQL+ L NE++    I    +   Y      + +T+  DS  D I  T GLS 
Sbjct: 934  RNAALLKRQLTWLFNEHLGKKGI-SGFINVDYKERLLSVELTMPQDSSRDTITDTRGLSG 992

Query: 259  SCRVLSVLCEVLMA*GVTK 315
              R  S LC  L   G+T+
Sbjct: 993  GERSFSTLCFTLALHGMTE 1011


>07_01_0547 +
           4052618-4052659,4055575-4055741,4055839-4056556,
           4056678-4057114,4057241-4057315,4057490-4057673,
           4057759-4057854,4057952-4058018,4058556-4058715,
           4058808-4059199,4059254-4059300
          Length = 794

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
 Frame = +1

Query: 382 IRPENLRSTALTMASVSKFSQIEPVSSPTRPRVTGIAP*AKAIGRGEK-----GESVEFQ 546
           +R   L   AL + S  K    +P+SS      T      K +  GE      GE +E Q
Sbjct: 369 LRGIGLHLNALALTSKDKMICQDPMSSLVPSSATQQEAHGKMLSAGENFIHPGGELLELQ 428

Query: 547 VEKVATWVTFIGNNHN 594
           ++   +   F+GN+H+
Sbjct: 429 MDDDCSAGVFLGNDHD 444


>08_01_0386 + 3424561-3425346
          Length = 261

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 498 LRGYSSYARTGR*AHGLNL-REFANTSHS 415
           LR +S +ARTG  A GLNL R   +  HS
Sbjct: 56  LRSWSEFARTGTFAGGLNLDRSVLSRPHS 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,162,797
Number of Sequences: 37544
Number of extensions: 270820
Number of successful extensions: 485
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)