Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0111.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)                    28   5.0  
SB_52818| Best HMM Match : CUB (HMM E-Value=1.6e-23)                   27   8.7  

>SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)
          Length = 872

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = -3

Query: 539 STLSPFSPLPIAL-A*GAIPVTRGRVGELTGSI*ENLLTLAIVRAVLRRFSGRILIAIHL 363
           S L   S + +AL   G + VT   +  LT    +   T A+   V+    G ILI IH+
Sbjct: 127 SILGDNSAVKLALWTFGLLAVTSNFLVLLTLLCNKEARTSALCLFVMNLLLGNILIGIHI 186

Query: 362 FTLTTFVWLLYFNNMRF 312
             LT    + Y N +R+
Sbjct: 187 VVLTVSDTITYGNFLRY 203


>SB_52818| Best HMM Match : CUB (HMM E-Value=1.6e-23)
          Length = 898

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -2

Query: 501 SLRGYSSYARTGR*AHGLNLR--EFANTSHSKSSASQILRPDPNRDPSIHFNYICMALVL 328
           S+R   S   TG+ +H L     E +N+SH K   + I    P+  P I    +CM +VL
Sbjct: 349 SMRPIYSVPYTGK-SHALTPTPTENSNSSHDKFKRACIQGGAPDNTPLIAIPLVCMLVVL 407


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,787,056
Number of Sequences: 59808
Number of extensions: 334587
Number of successful extensions: 613
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)