Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0111.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.3  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   4.0  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   5.3  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   5.3  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   5.3  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 162 RGPTFLHFSTHRFSCYY 212
           R P F+ F  H F C Y
Sbjct: 422 RNPWFVEFWEHHFQCRY 438


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 183 FSTHRFSCYYTLRQRVR*HH 242
           +    FSCYY+L++  +  H
Sbjct: 10  YCRRNFSCYYSLKRHFQDKH 29


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 329 FNNMRFVTPHAIRTSHKTDSTLQ 261
           +N  R +  H IRT  ++D TLQ
Sbjct: 330 WNEHRTLERHNIRTVAQSDETLQ 352


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 329 FNNMRFVTPHAIRTSHKTDSTLQ 261
           +N  R +  H IRT  ++D TLQ
Sbjct: 330 WNEHRTLERHNIRTVAQSDETLQ 352


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 329 FNNMRFVTPHAIRTSHKTDSTLQ 261
           +N  R +  H IRT  ++D TLQ
Sbjct: 330 WNEHRTLERHNIRTVAQSDETLQ 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,529
Number of Sequences: 438
Number of extensions: 3355
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)