Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0110.Seq
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 30 0.23
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.31
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 29 0.54
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 29 0.71
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 0.94
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 28 0.94
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 1.6
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 2.2
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.8
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p... 26 5.0
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 26 5.0
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch... 26 5.0
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 6.6
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz... 25 8.8
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 30.3 bits (65), Expect = 0.23
Identities = 14/56 (25%), Positives = 31/56 (55%)
Frame = -3
Query: 247 VKREDTYEVKTDDKKSNKIETSGIIENVEREETIEPELSDTLSDAVPINVVDPITN 80
+ R YE+ ++ +K + +++ ++ EE IEPE+ + L + + V+ +TN
Sbjct: 328 LSRAPHYELDNGNRLLSKRKLHDLLQQIDSEEKIEPEVEELLLE-IADEFVESVTN 382
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 29.9 bits (64), Expect = 0.31
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -3
Query: 181 GIIENVEREETIEPELSDTLSDAVPINVVD--PITNNHINLK 62
G+I+N+E + I E SDTL + + IN ++ N++ NLK
Sbjct: 280 GLIQNLEDSDDIHEESSDTLEEPLLINELNRTSFLNSNNNLK 321
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 29.1 bits (62), Expect = 0.54
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -2
Query: 566 HQLERNKLTVTKIDDAH--VSKAWPILCWTNXSRFRSRKHNLSNIQHQRLKIL 414
H +R L + DAH VSK W + + N + + L++ Q QR+ +L
Sbjct: 625 HHEQRILLDMNSFSDAHRFVSKLWNLARYFNQYKDKENPLKLTDSQRQRISLL 677
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 28.7 bits (61), Expect = 0.71
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = -1
Query: 309 DEVKTGDKESDKIETSGIERM*NVKTHTKLKQTIKSLIKSKLPVL 175
DE+ + D+IE +GI R V+ + +++ T+KSL K+ + V+
Sbjct: 398 DELVDSARAGDRIEVTGIFRCVPVRLNPRMR-TVKSLFKTYVDVV 441
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 28.3 bits (60), Expect = 0.94
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +2
Query: 137 FRFNSLF---TFYILYNTGSFDFIRLFIVCFNFVCVFTFHILSIPEVSILSDSLSPVLTS 307
F F+ LF +I+Y + SF + F VCVF + S+ + L+ P+L
Sbjct: 131 FSFSFLFFLSQIFIVYFS-SFPILHFLFFFFLCVCVFLSFLFSLSHLLSLAILFLPLLLR 189
Query: 308 SFSVVCKL 331
FS + +L
Sbjct: 190 VFSTLSRL 197
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 28.3 bits (60), Expect = 0.94
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = -1
Query: 399 EANFSVGKNEKIDSDEQMIGIAANLQTTEKDEVKTGDKESDKIETSGIERM*NVKTHTKL 220
E+NFS ++E D Q++ + L EKD K + S + E+ N +
Sbjct: 193 ESNFSAKQSEAYDLSRQLLTVTEKLDKKEKDYEKIKEDVSSIKASLAEEQASNKSLRGEQ 252
Query: 219 KQTIKSLIKSKLPV 178
++ K L+ S V
Sbjct: 253 ERLEKLLVSSNKTV 266
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = -3
Query: 244 KREDTYEVKTDDKKSNKIETS----GIIENVEREETIEPELSDTLSDAVPINVVDPITN 80
K ED+++ KTD++ + T+ ++ N E E E DT + A P ++V+ N
Sbjct: 70 KHEDSFDSKTDEEYLQNVSTTTEDVSMLINTPVTEKYEQEHRDTSAQATP-SIVEQSPN 127
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 238 EDTYEVKTDDKKSNKIETSGIIENVEREETI 146
E+ VKT++KK + E+S E+ E EE +
Sbjct: 123 EEEVIVKTEEKKESSSESSSSSESEEEEEAV 153
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -3
Query: 253 ENVKREDTYEVKTDDKKSNKIETSGIIENVEREET 149
+N K++ +T KKS K+ETS +++ ++ +
Sbjct: 53 KNTKKDTLVNRETPSKKSQKLETSDALKSKSKDSS 87
>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -2
Query: 482 NXSRFRSRKHNLSNIQHQRLKILF--HLEMKPIFQLGKMRKSI 360
N +RF SRK S I ++++++ HL + LG+ ++SI
Sbjct: 208 NKTRFSSRKPGASQILSSKVQLMYYVHLFLNYFPSLGEKQQSI 250
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +2
Query: 215 CFNFVCVFTFHIL--SIPEVSILSDSLSPVLTSSFSVVCK 328
C NF C+ +L S S + +SLSP+LTS + K
Sbjct: 952 CTNF-CILILQLLLNSTATASNILESLSPLLTSGLKSISK 990
>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 370
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 245 HILSIPEVSILSDSLSPVLTSSFSVVCKLAAMP 343
+IL+ S +S LS + +S+F+ CK++AMP
Sbjct: 33 NILNFEIPSGVSCQLSSLTSSNFASGCKISAMP 65
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.4 bits (53), Expect = 6.6
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = -1
Query: 387 SVGKNEKIDSDEQMIG-IAANLQTTEKDEVKTGDKESDKIETSGIERM*NVKTHTKLKQT 211
S+G ++ D+DEQ+ G + + D + SDK + + ++RM T ++ Q
Sbjct: 1073 SIGTSD--DNDEQVSGKLVDDSDDVSNDRKSSLSSVSDK-DAAVLQRMGAQLTLQQMAQN 1129
Query: 210 IKSLIKSKLPVL 175
S + S++PVL
Sbjct: 1130 FGSSLFSRVPVL 1141
>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
Fub2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 202 SNKIETSGIIENVEREETIEPELSDTLSDAVPIN 101
SN E+ GII+NV E E+++ + +N
Sbjct: 207 SNDQESDGIIDNVSANEMERREIAELARETTELN 240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,658
Number of Sequences: 5004
Number of extensions: 41253
Number of successful extensions: 168
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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