Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0110.Seq
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792,486...    29   2.2  
01_05_0630 - 23811576-23811728,23812473-23812561,23812644-238127...    29   2.2  
09_02_0088 + 4136698-4136857,4137530-4137558,4137992-4138954,413...    29   3.9  
05_05_0271 + 23733626-23733965,23734558-23735132,23736065-23736070     29   3.9  
09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240...    28   5.2  
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157...    28   5.2  
05_01_0372 - 2913518-2916562,2916674-2917528                           28   6.8  

>05_01_0554 +
           4856131-4856605,4858051-4858098,4860611-4860792,
           4861409-4863136
          Length = 810

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -3

Query: 226 EVKTDDKKSNKIETSGIIENVEREETIEPELSDTLSDAVPI 104
           E   +  K++++E+ G+  NVE ++    E+++  S AVPI
Sbjct: 426 EEAVEANKASRLESEGVEVNVELQKEEATEVNEARSQAVPI 466


>01_05_0630 -
           23811576-23811728,23812473-23812561,23812644-23812764,
           23812867-23812992,23813399-23813505,23813742-23813856,
           23815071-23815274
          Length = 304

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 500 PILCWT--NXSRFRSRKHNLSNIQHQRLKILFH 408
           P+LCW   + +RF  R    S++  Q LK+++H
Sbjct: 229 PVLCWALDHVARFLRRNFARSSLYRQLLKLMYH 261


>09_02_0088 +
           4136698-4136857,4137530-4137558,4137992-4138954,
           4138973-4139301,4139398-4139485,4139766-4139864,
           4139935-4140245,4140532-4140685
          Length = 710

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -3

Query: 226 EVKTDDKKSNKIETSGIIENVEREETIEPELSDTLSDAVPI 104
           E   +  K++++E+ G+  NVE ++    E+++  S AVPI
Sbjct: 254 EEAVEANKASRLESEGVEVNVELQKEEAIEVNEARSQAVPI 294


>05_05_0271 + 23733626-23733965,23734558-23735132,23736065-23736070
          Length = 306

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = -1

Query: 399 EANFSVGKNEKIDSDEQMIGIAANLQTTEKDEVKTGDKESDKIETS 262
           +  F+VG    + +   ++G+AA +   +++  K+G +E DK E +
Sbjct: 78  QMGFAVGGGSVVVATASLVGLAATILCFKQNTDKSGAREEDKEEVT 123


>09_06_0244 + 21822811-21823246,21823337-21823468,21823949-21824037,
            21824135-21824224,21825033-21825603,21826097-21826734,
            21826978-21827098,21827223-21827337,21828234-21829723,
            21829830-21829901,21830151-21830196,21830413-21830515,
            21830591-21830674,21831035-21831475,21831651-21831746,
            21831896-21832045,21832131-21832274,21832414-21832527,
            21832621-21832803,21832901-21832945,21833058-21833192
          Length = 1764

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 357  QNRFSHFSQLKNWLHL*V-K*YLESLMLYIREIV 455
            Q  + H+ QLK W HL V K  +  L LY  E +
Sbjct: 1606 QKEYVHYKQLKGWKHLVVYKSSIHGLGLYTSEFI 1639


>02_05_0366 -
           28313190-28313601,28313759-28314225,28315044-28315782,
           28316548-28316615,28316693-28316757,28316922-28320162,
           28320239-28320301,28320756-28320824,28321020-28321055,
           28322035-28322280,28322531-28322569,28322695-28322816,
           28322921-28323004,28323100-28323235,28323486-28323535,
           28323620-28323756,28323863-28323951,28324847-28324954,
           28325080-28325163,28325841-28325888,28326036-28326153,
           28328262-28328347
          Length = 2168

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = -2

Query: 569 SHQLERNKLTVTKIDDAHVSKAWPILCWTNXSRFRSRKHNL---SNIQHQRLKI--LFHL 405
           S   +R K     +D+AH+ K W    W     F S++  L   + +Q+  +++  L H 
Sbjct: 782 SKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHF 841

Query: 404 EMKPIFQ 384
            M  +FQ
Sbjct: 842 LMPHVFQ 848


>05_01_0372 - 2913518-2916562,2916674-2917528
          Length = 1299

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/44 (25%), Positives = 27/44 (61%)
 Frame = -3

Query: 253 ENVKREDTYEVKTDDKKSNKIETSGIIENVEREETIEPELSDTL 122
           E+ ++E T +  + +  ++    S + E+ E+E+T+E E S+++
Sbjct: 306 ESTEKEQTVDDTSSEMIAHVSAESAVEESTEKEQTVESEASESV 349


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,249,599
Number of Sequences: 37544
Number of extensions: 228166
Number of successful extensions: 672
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)