Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0110.Seq
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41173| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.8)                32   0.32 
SB_29938| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.57 
SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.57 
SB_16273| Best HMM Match : SWIM (HMM E-Value=0.02)                     31   0.75 
SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)                   31   0.75 
SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_19175| Best HMM Match : 7tm_1 (HMM E-Value=4.2e-05)                 29   3.0  
SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_5147| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_24227| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)                 27   9.2  

>SB_41173| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.8)
          Length = 405

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -1

Query: 450 SLEYTTSTTQDIISPRDEANFSV-GKNEKIDSDEQMIGIAANLQTTEKDEVKTGDKESDK 274
           S E  T  T D + P+ +A   V G+N + +  ++   +A   +T+  +EVK  ++ S+K
Sbjct: 107 SEENATKETSDQVDPQGDAGSDVKGENTESEGAKEAEPVAEKTETSATEEVKASEQVSEK 166



 Score = 30.7 bits (66), Expect = 0.99
 Identities = 21/93 (22%), Positives = 44/93 (47%)
 Frame = -1

Query: 453 QSLEYTTSTTQDIISPRDEANFSVGKNEKIDSDEQMIGIAANLQTTEKDEVKTGDKESDK 274
           QS E   ST     +P  E N +   ++++D      G     + TE +  K  +  ++K
Sbjct: 90  QSEEPKDSTVDSKATPDSEENATKETSDQVDPQGDA-GSDVKGENTESEGAKEAEPVAEK 148

Query: 273 IETSGIERM*NVKTHTKLKQTIKSLIKSKLPVL 175
            ETS  E +   +  ++ ++  K +++++ PV+
Sbjct: 149 TETSATEEVKASEQVSEKEKPDKPVLEAEKPVI 181


>SB_29938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = -3

Query: 235 DTYEVKTDDKKSNKIETSGIIENVEREETIEPELSDTLSDAVPINVVDPITNNHINLKPD 56
           DT    T D +SN I  S +   +E +  I    S T+     +N VDP  NN  +   +
Sbjct: 416 DTRLYTTVDSRSNPIPESDLHTTLEDQTLISDSPSRTIQHQNELNNVDPTVNNRHDTMSN 475

Query: 55  NF 50
            F
Sbjct: 476 TF 477


>SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 5/132 (3%)
 Frame = -1

Query: 582 ATRSKPPA*TQQADGHQNR*RTRQ*SMADSVLDEXEPFSFXETQSLEYTTST-----TQD 418
           AT ++    TQQ    Q+   T+Q +      D  +     +T S ++TT T     TQ 
Sbjct: 294 ATNTQQTTDTQQTSSTQHTTDTQQATNTQHTTDTQQTTDTQQTSSTQHTTDTQQATNTQQ 353

Query: 417 IISPRDEANFSVGKNEKIDSDEQMIGIAANLQTTEKDEVKTGDKESDKIETSGIERM*NV 238
             + + + N  +  + +  ++ Q+   ++  QT+         + ++  +TS  ++  N 
Sbjct: 354 TTNTQQKTNTQLTSSTQHTTNTQL--TSSTQQTSSMQPTTDTQQTTNTQQTSNTQQTSNT 411

Query: 237 KTHTKLKQTIKS 202
           +  T ++ T K+
Sbjct: 412 QQTTSMQHTTKT 423


>SB_16273| Best HMM Match : SWIM (HMM E-Value=0.02)
          Length = 817

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = -1

Query: 399 EANFSVGKNE---KIDSDEQMIGIAANLQTTEKDEVKTGDKESDKIETS 262
           EA+  +G +E   K+DSD+ +  I     T   D + TGDKE  K++++
Sbjct: 520 EADGDLGTSEVEAKVDSDDNLGTIQKEAITDNDDSMSTGDKERLKLQST 568


>SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)
          Length = 347

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 137 FRFNSLFTFYILYNTGSFDFIRLFIVCFNFVC 232
           + + SLF F  + +   +D   LF VCFN+ C
Sbjct: 242 YAYCSLFVFITIVHASVYDLRVLFFVCFNYNC 273


>SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/80 (25%), Positives = 37/80 (46%)
 Frame = -1

Query: 501 ADSVLDEXEPFSFXETQSLEYTTSTTQDIISPRDEANFSVGKNEKIDSDEQMIGIAANLQ 322
           AD   ++  P     T++L  +     D  +P     F    + K D    +  + A+++
Sbjct: 419 ADETTEDKTP-EMRVTRNLMTSNKNDDDFNNP---LIFMFQSSAKSDDSPSINDLRADIE 474

Query: 321 TTEKDEVKTGDKESDKIETS 262
           +  KD +KTGDK+S   +T+
Sbjct: 475 SAIKDALKTGDKKSAPKQTA 494


>SB_19175| Best HMM Match : 7tm_1 (HMM E-Value=4.2e-05)
          Length = 431

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +2

Query: 143 FNSLFTFYILYNTGSFDFIRLFIVCFNFVCVFTF 244
           F+++  FY  Y +    F+ LF++C ++  +F +
Sbjct: 236 FHAISRFYFFYTSTVLTFLSLFVICVSYGLMFYY 269


>SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 910

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -3

Query: 211 DKKSNKIETSGIIENVEREETIEPELSDTLSDAVPINVVDPITNNHIN 68
           D+KS  I++    E + RE    PE+    + AV +N+ D +T +HI+
Sbjct: 658 DEKSTYIKSPPFFEAMTREL---PEIKGIQNAAVLLNLGDSVTTDHIS 702


>SB_5147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
 Frame = -2

Query: 575 DQSHQLERNKLTVTKIDDAHVSKAWPILCWTNXSRFRSRKHNLSNIQHQRLKILFHLEMK 396
           D  ++L+  K T+ K++ A   +  P+       R    +  L +I  +  ++   L  K
Sbjct: 136 DSLNRLQSGK-TLKKVESALKEQVRPLERHIIADRSWISEQELEDIDEEIRRLELWLSRK 194

Query: 395 PI-FQLGKMRKSILMNR*SA*LLIYKQLK 312
            +  QL K RKS+L    +   LIYK LK
Sbjct: 195 ILKHQLEKRRKSLLTEDKACIYLIYKALK 223


>SB_24227| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = -3

Query: 253 ENVKREDTYEVKTDDKKSNKIETSGIIENVEREETIEPELSDTLSDAVPINVVDPITNNH 74
           EN+K E+T    T    S  + +   +EN+   ++I  +L D  +D V  N+++  T N 
Sbjct: 146 ENIK-ENTQIFITSH--SPTLTSKAKLENLIVLDSIAYKLDDCFTDRVSENIIED-TKNK 201

Query: 73  INLKPDNFWINK 38
           + L  D+F   K
Sbjct: 202 VKLNEDDFITRK 213


>SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)
          Length = 1299

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/52 (23%), Positives = 28/52 (53%)
 Frame = -1

Query: 456 TQSLEYTTSTTQDIISPRDEANFSVGKNEKIDSDEQMIGIAANLQTTEKDEV 301
           T S +  T +  D+++ +D+      +++   SD+Q+    +++ TT  D+V
Sbjct: 497 TTSDDQVTPSASDVLTAKDDQVTPSARDDPTTSDDQVTPSDSDVPTTSDDQV 548


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,003,927
Number of Sequences: 59808
Number of extensions: 286414
Number of successful extensions: 946
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)