Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0110.Seq
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97016-10|AAP68963.1|  181|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z82070-4|CAB04913.2|  227|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF000198-2|AAB53055.2|  748|Caenorhabditis elegans Hypothetical ...    29   2.7  
U39997-8|AAA81100.1|  718|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z74043-7|CAA98539.2|  705|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical...    27   8.1  
AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine re...    27   8.1  

>U97016-10|AAP68963.1|  181|Caenorhabditis elegans Hypothetical
           protein B0261.8 protein.
          Length = 181

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
 Frame = -1

Query: 459 ETQSLEYTTSTTQDIISPRDEANFSVGKNEKI--DSDEQMIGIAANLQTTEKD-EVKTGD 289
           E +++E+     ++ I  +DE      +N++   DSDE+   I A  ++TEKD E+   +
Sbjct: 53  EEENIEFEHEIDEEEIEEQDEIVHEQSENDQNLKDSDEKKNEIVALEKSTEKDEELPIPE 112

Query: 288 KESDKIETSGIERM*NVKTHT 226
           KE+   +   +E +   +T +
Sbjct: 113 KEAQVDQEDTLENLFEKETES 133


>Z82070-4|CAB04913.2|  227|Caenorhabditis elegans Hypothetical
           protein W04E12.4 protein.
          Length = 227

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = -3

Query: 253 ENVKREDTYEVKTDDKKSNKIETSGIIENVEREE-TIEPELSDTLSDAVPINVVDPITNN 77
           ENVK   T E ++DD   + +E S I+E  E ++ T  P+++ ++     I +V  +   
Sbjct: 150 ENVKNSPTSEPESDDGTDSDLE-SEILETDEMDDVTTSPQITSSVPKFALICIVPIVLAI 208

Query: 76  HINLKPDNF 50
            + L P +F
Sbjct: 209 LLYLAPIDF 217


>U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical
           protein B0244.6 protein.
          Length = 982

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 131 GQFRFNSLFTFYILYNTGS-FDFIRLFIVCFNFVCVFTFHILSIPEVSILSDS 286
           G  + +  FT  + ++ G+ FDFI  FI+  +   VFT  IL    +S++  S
Sbjct: 404 GVLQISHHFTICLYFSFGNLFDFIGNFIIIASVCLVFTIAILFFVFISLVRSS 456


>AF000198-2|AAB53055.2|  748|Caenorhabditis elegans Hypothetical
           protein T28F2.4a protein.
          Length = 748

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -1

Query: 378 KNEKIDSD-EQMIGIAANLQTTEKDEVKTGDKESDKIETSGIERM*NVKT 232
           K E ++SD EQMIG+ ++ +  ++DE    D++   I+   IER  N ++
Sbjct: 159 KTEVVESDDEQMIGLDSDEELEDEDETDI-DEDEMMIDPKDIERYINFES 207


>U39997-8|AAA81100.1|  718|Caenorhabditis elegans Hypothetical
           protein F56D1.2 protein.
          Length = 718

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 118 DAVPINVVDPITNNHINLKPDNFWINKYATD 26
           D  P  +VDP TN  I  K D FW    + D
Sbjct: 225 DMFPEILVDPTTNQSIITKTDPFWAPMLSAD 255


>Z74043-7|CAA98539.2|  705|Caenorhabditis elegans Hypothetical
           protein T19B10.5 protein.
          Length = 705

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = -3

Query: 226 EVKTDDKKSNKIETSGIIENVEREETIEPELSDTLSDAVPINVVDPITNNHINLKPDNFW 47
           E+K DD K  +I  + I    +R ++I+  + +    ++P +V      +H   K DN W
Sbjct: 563 EIKEDDSKGPEITEARISRIPKRSDSIKTPVIERKLPSLPKSVTQ---RSHSADKNDNVW 619

Query: 46  INKY 35
              Y
Sbjct: 620 SRLY 623


>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
           protein Y47D3A.26 protein.
          Length = 1205

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -3

Query: 184 SGII-ENVEREETIEPELSDTLSDAVPIN 101
           SG+I +N EREETI+ EL+D   +   +N
Sbjct: 404 SGLIADNKEREETIQKELADVEREDEKLN 432


>AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein77 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +2

Query: 137 FRFNSLFTFYILYNTGSFDFIRLFIVCFNFVCVFT 241
           F  NS+  +++++NT      + +++ F   CV T
Sbjct: 24  FILNSIGIYFLIFNTNRLGNFKYYLLLFQLSCVLT 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,200,717
Number of Sequences: 27780
Number of extensions: 229461
Number of successful extensions: 890
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)