Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0109.Seq
         (568 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|R...    48   1e-04
UniRef50_UPI00006CFB46 Cluster: FHA domain protein, putative; n=...    33   6.2  
UniRef50_A0LJS8 Cluster: Phospholipid/glycerol acyltransferase; ...    33   6.2  

>UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|Rep:
           Sericin 1 precursor - Bombyx mori (Silk moth)
          Length = 1186

 Score = 48.4 bits (110), Expect = 1e-04
 Identities = 33/77 (42%), Positives = 33/77 (42%)
 Frame = -3

Query: 566 YSDXNIVAHSSGSRGSQNQNRRVTALDKYGXXXXXXXXXXXXXXXXXXXXXSDGAXAXXX 387
           YSD NIVAHSSGSRGSQNQ       DK G                     SDGA A   
Sbjct: 386 YSDKNIVAHSSGSRGSQNQKSSSYRADKDGFSSSTNTEKSKFSSSNSVVETSDGASASRE 445

Query: 386 XXXXXXXXXXSNVQSDE 336
                     SNVQSDE
Sbjct: 446 SSAEDTKSSNSNVQSDE 462


>UniRef50_UPI00006CFB46 Cluster: FHA domain protein, putative; n=1;
           Tetrahymena thermophila SB210|Rep: FHA domain protein,
           putative - Tetrahymena thermophila SB210
          Length = 610

 Score = 32.7 bits (71), Expect = 6.2
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 326 EEELFDVVSYQKIEDGKPVIIMKVY 252
           E +++D+V Y K EDG P +I++ Y
Sbjct: 449 EGQIYDIVDYSKPEDGSPYLILEAY 473


>UniRef50_A0LJS8 Cluster: Phospholipid/glycerol acyltransferase;
           n=2; Proteobacteria|Rep: Phospholipid/glycerol
           acyltransferase - Syntrophobacter fumaroxidans (strain
           DSM 10017 / MPOB)
          Length = 304

 Score = 32.7 bits (71), Expect = 6.2
 Identities = 20/47 (42%), Positives = 26/47 (55%)
 Frame = +2

Query: 299 KIQHRTIPLLRLFHRSERYYWMIWXPXLMIRD*XKLHLKFLRRYSKN 439
           KI HR IPLL+ F + E    +IW P L       L   F++RYSK+
Sbjct: 106 KIFHRRIPLLKFFLKKE----LIWMPFLGFA-WWALDFPFMKRYSKS 147


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 462,260,043
Number of Sequences: 1657284
Number of extensions: 8066109
Number of successful extensions: 26838
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26747
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38321472724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)