Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0109.Seq
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   3.4  
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po...    26   4.4  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   7.7  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   7.7  

>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 258 FHYDYRLAIFNFLVRYNIEQFLFFAC 335
           FH  +   +F+  V YNIE  L+  C
Sbjct: 241 FHVLHAFTLFDTTVEYNIEPLLWLTC 266


>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 127 YTLLQKKILRRSLCS*ANTNTNSIKRFNGTTTAYRAPFSR 8
           +  L +KI+R  L + +N +         +TT YRAPFSR
Sbjct: 78  FLYLNEKIIR--LIATSNEDAEEWVHVLRSTTGYRAPFSR 115


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 165 PRPLSIWTGPGRDIPFFRRKYSGARSVPKPIPIPIQ 58
           P P ++     R IPF    YS ++SVP  +P P Q
Sbjct: 532 PYPENLIASIERLIPFIFSSYSNSQSVPL-LPCPTQ 566


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 98  PEYFLLKKGISRPGPVH 148
           P++   + G+SRPGP H
Sbjct: 498 PQFVKCQMGLSRPGPFH 514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,899,597
Number of Sequences: 5004
Number of extensions: 32675
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)