Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0109.Seq
         (568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_8626| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_7139| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_7409| Best HMM Match : DUF963 (HMM E-Value=1.6)                     27   8.1  

>SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1660

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 423  DAIRRTKFGXFXIRTGGKTVLVKRGNSTIL 512
            DAIR T+ G   IRT G T+  + G  T L
Sbjct: 1136 DAIRSTQMGPNHIRTSGGTIYTQTGEITPL 1165


>SB_8626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 120 FFRRKYSGARSVPKPIPIPIQSKGSTERPQPTGHR 16
           F  RK+SG   +P+ +  P++ K    R    GHR
Sbjct: 35  FLARKFSGGLRLPRTVFGPVKQKNGCRRRVLFGHR 69


>SB_7139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 753

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -2

Query: 165 PRPLSIWTGPGRDIPFFRRKYSGARSVPKPIPIPIQSKGSTER---PQPTGHR 16
           PRP  + TGPG  +P  +         P  +P+P++ + +T R    +P  HR
Sbjct: 403 PRPPRVCTGPGHALPTLKS--------PGWVPVPLEEQAATPRYEGDRPVYHR 447


>SB_7409| Best HMM Match : DUF963 (HMM E-Value=1.6)
          Length = 183

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 152 PYGPVQAVIYPSSEENTQALALFLSQYQ 69
           PY P   +IYP      Q L+ F++ YQ
Sbjct: 153 PYQPSSTIIYPYQPLYLQPLSAFINSYQ 180


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,228,559
Number of Sequences: 59808
Number of extensions: 253215
Number of successful extensions: 767
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)